; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0016441 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016441
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionThioredoxin-like protein YLS8
Genome locationchr10:4890944..4893039
RNA-Seq ExpressionIVF0016441
SyntenyIVF0016441
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143618.1 thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus]2.77e-10099.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

XP_007223713.1 thioredoxin-like protein YLS8 isoform X2 [Prunus persica]5.58e-10098.59Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVV+IRFGHDWDDTCMQMDEVLASVAET+KNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

XP_008361907.1 thioredoxin-like protein YLS8 isoform X2 [Malus domestica]1.95e-100100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

XP_028947303.1 thioredoxin-like protein YLS8 isoform X2 [Malus domestica]3.93e-10099.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAET+KNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

XP_030457658.1 thioredoxin-like protein YLS8 isoform X2 [Syzygium oleosum]2.77e-10099.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVV+IRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

TrEMBL top hitse value%identityAlignment
A0A1S3BEF1 thioredoxin-like protein YLS84.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

A0A4U5QS93 Thioredoxin-like protein YLS8 isoform X24.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

A0A5A7STV6 Thioredoxin-like protein YLS8 isoform X24.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1CCM0 thioredoxin-like protein YLS8 isoform X25.6e-7799.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1KK33 thioredoxin-like protein YLS85.6e-7799.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A2.0e-7185.21Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

P83877 Thioredoxin-like protein 4A2.0e-7185.21Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

P87215 Mitosis protein dim17.1e-6173.94Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY LPHLHSGW VDQAIL+E+ER+V+IRFG D D+ C++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINW L+DKQE IDI+ET++RGARKG+GLVI+PKDYST++RY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

Q75BD8 Spliceosomal protein DIB11.5e-5065.22Show/hide
Query:  SYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK
        S  LPHLHSGW VDQAI+ EEER+V+IRFG D D +CM MDE+L S+AE + NFA IY+ D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK
Subjt:  SYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK

Query:  INWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK
        +N+ + +KQE IDI+ETV+RGAR+ +GLV++P DY+ K
Subjt:  INWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK

Q9FE62 Thioredoxin-like protein YLS82.8e-7896.48Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP3.6e-2038.69Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT
        MSYLL  L +   +D+ I    + V+++RFG   D  C+Q DE+LA     +  FA + LVD+ +  D     + +D    PST+ FFF   H+ +D GT
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT

Query:  GNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP
         ++ K   A   KQ+FID+VE +YRGA KG+ +V  P
Subjt:  GNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP2.0e-7996.48Show/hide
Query:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACCTTCTACCGCATTTGCATTCAGGATGGGCTGTGGATCAAGCCATTCTCGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACAC
CTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCGGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATG
AACTGTATGATCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGGAACAACAATAAGATAAATTGGGCACTCAAGGATAAACAA
GAGTTCATTGATATTGTTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTACCTTCTACCGCATTTGCATTCAGGATGGGCTGTGGATCAAGCCATTCTCGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACAC
CTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCGGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATG
AACTGTATGATCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGGAACAACAATAAGATAAATTGGGCACTCAAGGATAAACAA
GAGTTCATTGATATTGTTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAG
Protein sequenceShow/hide protein sequence
MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
EFIDIVETVYRGARKGRGLVIAPKDYSTKYRY