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IVF0016500 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016500
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy sub-class
Genome locationchr11:21613264..21613500
RNA-Seq ExpressionIVF0016500
SyntenyIVF0016500
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047409.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]1.82e-1267.86Show/hide
Query:  QDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS
        Q+ Y EDFSLHSW+ PS V LKY   +EL GGRTKVQP  IEKM NAL  SGE SS
Subjt:  QDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS

KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.81e-0865.12Show/hide
Query:  ISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTK
        I  KCF+L D YFE+F+LHSWH PS ++ KYR GSEL GGR K
Subjt:  ISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTK

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]5.32e-1366.13Show/hide
Query:  FDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSGVR
        F+LQD   +DFSLHS HRPS VF KYR G ELV  RTKVQ   IEKMANAL  SG  S G R
Subjt:  FDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSGVR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]5.25e-1870.97Show/hide
Query:  AISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGE
         +  K F+LQD Y EDFSLHSW  PSPVF KYR GS+LV GRTKVQ  TIEKMAN LPTSG+
Subjt:  AISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGE

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.57e-1574.51Show/hide
Query:  EDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS
        +DFSLH WH  SP+F +YR GSELVG RTKVQ  TIEK+ANALPTSGE SS
Subjt:  EDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS

TrEMBL top hitse value%identityAlignment
A0A5A7U1Q6 Retrotransposon protein, putative, Ty3-gypsy sub-class9.4e-1067.86Show/hide
Query:  QDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS
        Q+ Y EDFSLHSW+ PS V LKY   +EL GGRTKVQP  IEKM NAL  SGE SS
Subjt:  QDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed1.3e-1475.86Show/hide
Query:  KCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGE
        K F+LQD Y EDFSLHSW  PSPVF KYR GS+LV GRTKVQ  TIEKMAN LPTSG+
Subjt:  KCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGE

A0A5A7VGQ5 Uncharacterized protein2.5e-1066.13Show/hide
Query:  FDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSGVR
        F+LQD   +DFSLHS HRPS VF KYR G ELV  RTKVQ   IEKMANAL  SG  S G R
Subjt:  FDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSGVR

A0A5D3BG85 Uncharacterized protein5.9e-1274.51Show/hide
Query:  EDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS
        +DFSLH WH  SP+F +YR GSELVG RTKVQ  TIEK+ANALPTSGE SS
Subjt:  EDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSS

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein4.8e-0665.12Show/hide
Query:  ISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTK
        I  KCF+L D YFE+F+LHSWH PS ++ KYR GSEL GGR K
Subjt:  ISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTT
CCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCG
GTGTTAGAAAGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGCCTCGACGACTACAAGGCCATTAGCCTAAAGTGCTTCGATCTTCAAGACTTTTACTTCGAGGACTTTAGCCTACACTCCTGGCATCGTCCCTCACCTGTTTT
CCTAAAGTATAGGTTAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTCCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGCGAATTCTCGTCCG
GTGTTAGAAAGCAATAA
Protein sequenceShow/hide protein sequence
MSGLDDYKAISLKCFDLQDFYFEDFSLHSWHRPSPVFLKYRLGSELVGGRTKVQPKTIEKMANALPTSGEFSSGVRKQ