CuGenDBv2

Gene ID	IVF0016529
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr06:19267268..19267831
RNA-Seq Expression	IVF0016529
Synteny	IVF0016529
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0044249 - cellular biosynthetic process (biological process) GO:1901576 - organic substance biosynthetic process (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033896.1 retrotransposon protein [Cucumis melo var. makuwa]

7.85e-44

60.54

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Query:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE
        + Y+ G  CK K NRELM++I   EE+ E  + K E +   VE +TLEVK +T+I L TILGFTSKGTMKL+G + GR+VIILID GATHNFIHQ +V E
Subjt:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE

Query:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        L L   G+ KF VTIGDG  LEGKG CK++E KL +LTIV DFL IE
Subjt:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

KAA0036566.1 retrotransposon protein [Cucumis melo var. makuwa]

3.30e-44

63.27

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Query:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE
        + Y+ G  CK K NRE M +I  EEE   E E K E +   VE +TLE+K ET+I L TILGFTSKGTMKL+G +  REVIILID GATHNFIH  +V E
Subjt:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE

Query:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        L LP  G+ KF VTIGDG AL GKG CK +EVKL ELTIVADFL IE
Subjt:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

KAA0046897.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.41e-87

95.24

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Query:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE
        + Y+    CKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE
Subjt:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE

Query:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
Subjt:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

KAA0050701.1 retrotransposon protein [Cucumis melo var. makuwa]

8.65e-51

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Query:  QITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFI
        Q  I +   Y+ G  CKVKENR+LM +IA EEED E+   K EA+P +VEL+ LEVK ETKI L TILGFTSKGT KL+G V GREVIILID G THNFI
Subjt:  QITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFI

Query:  HQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADF
        HQ VV EL+LP  G+    VTI +G  LEGKG CK++EVKL ELTIVA+F
Subjt:  HQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADF

TYK01280.1 retrotransposon protein [Cucumis melo var. makuwa]

3.32e-44

60.54

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Query:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE
        + Y+ G  CK K NRELM++I   EE+ E  + K E +   VE +TLEVK +T+I L TILGFTSKGTMKL+G + GR+VIILID GATHNFIHQ ++ E
Subjt:  ENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNE

Query:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        L L   G+ KF VTIGDG  LEGKG CK++EVKL +LTIV DFL IE
Subjt:  LDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SVA3 Retrotransposon protein

7.3e-38

58.06

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Query:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF
        K +     + Y+ G  CK K NRELM++I   EE+ E  + K E +   VE +TLEVK +T+I L TILGFTSKGTMKL+G + GR+VIILID GATHNF
Subjt:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF

Query:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        IHQ +V EL L   G+ KF VTIGDG  LEGKG CK++E KL +LTIV DFL IE
Subjt:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

A0A5A7T3B8 Retrotransposon protein

1.2e-37

60.65

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Query:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF
        K +     + Y+ G  CK K NRE M +I  EEE   E E K E +   VE +TLE+K ET+I L TILGFTSKGTMKL+G +  REVIILID GATHNF
Subjt:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF

Query:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        IH  +V EL LP  G+ KF VTIGDG AL GKG CK +EVKL ELTIVADFL IE
Subjt:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

A0A5A7UAV8 Retrotransposon protein

2.4e-41

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Query:  QITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFI
        Q  I +   Y+ G  CKVKENR+LM +IA EEED E+   K EA+P +VEL+ LEVK ETKI L TILGFTSKGT KL+G V GREVIILID G THNFI
Subjt:  QITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFI

Query:  HQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADF
        HQ VV EL+LP  G+    VTI +G  LEGKG CK++EVKL ELTIVA+F
Subjt:  HQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADF

A0A5D3BQE6 Retrotransposon protein

3.3e-38

58.06

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Query:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF
        K +     + Y+ G  CK K NRELM++I   EE+ E  + K E +   VE +TLEVK +T+I L TILGFTSKGTMKL+G + GR+VIILID GATHNF
Subjt:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF

Query:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        IHQ ++ EL L   G+ KF VTIGDG  LEGKG CK++EVKL +LTIV DFL IE
Subjt:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

A0A5D3BU51 Ty3-gypsy retrotransposon protein

9.5e-70

90.97

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Query:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF
        K +     + Y+    CKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF
Subjt:  KQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNF

Query:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
Subjt:  IHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G29750.1 Eukaryotic aspartyl protease family protein

3.6e-05

26.27

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Query:  EVKVEAKPIVVELKTLEVKEET--KIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQ
        +V  + K ++ EL+ LE    T  + +   ++  T    M+  G +   +V++ ID GAT NFI  ++   L LP     +  V +G    ++  GTC  
Subjt:  EVKVEAKPIVVELKTLEVKEET--KIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNELDLPNKGEAKFRVTIGDGIALEGKGTCKQ

Query:  LEVKLLELTIVADFLAIE
        + + + E+ I  +FL ++
Subjt:  LEVKLLELTIVADFLAIE

AT3G30770.1 Eukaryotic aspartyl protease family protein

2.1e-05

27.07

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Query:  ELMLYIAKEEEDWEEGEVKVEAKPIVVELKTL-EVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNELDLPNKGEAKFRVT
        ELM +I  E   +  G    E + ++ + KT+ +VK +      +   FT    M+  G +   +V+++ID GAT+NFI  ++   L LP     +  V 
Subjt:  ELMLYIAKEEEDWEEGEVKVEAKPIVVELKTL-EVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNELDLPNKGEAKFRVT

Query:  IGDGIALEGKGTCKQLEVKLLELTIVADFLAIE
        +G    ++  GTC  + + + E+ I  +FL ++
Subjt:  IGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

Sequences

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CDS sequence

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ATGAAGCAAATTACGATTTCAGTCAAGGAAAATTATGCGAGAGGTAAGTTTTGCAAGGTCAAAGAAAATCGTGAACTGATGTTATATATTGCGAAAGAAGAAGAAGATTG
GGAGGAGGGAGAGGTGAAGGTGGAAGCCAAGCCTATAGTGGTGGAACTCAAAACACTAGAGGTAAAGGAAGAAACAAAAATAGTTCTTCCAACCATTTTGGGTTTTACTT
CGAAGGGAACGATGAAATTGAAAGGGGCAGTGTGTGGCAGAGAAGTAATAATCCTCATCGACAGGGGCGCAACACATAATTTCATCCATCAAAAGGTAGTCAATGAGTTA
GACTTACCAAACAAAGGGGAGGCTAAATTCAGAGTGACGATTGGTGATGGAATCGCACTGGAAGGGAAAGGGACTTGTAAACAACTTGAGGTCAAACTTCTTGAATTGAC
AATTGTAGCCGATTTTCTGGCTATCGAATAG

mRNA sequence

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Protein sequence

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MKQITISVKENYARGKFCKVKENRELMLYIAKEEEDWEEGEVKVEAKPIVVELKTLEVKEETKIVLPTILGFTSKGTMKLKGAVCGREVIILIDRGATHNFIHQKVVNEL
DLPNKGEAKFRVTIGDGIALEGKGTCKQLEVKLLELTIVADFLAIE

IVF0016529 (gene) of Melon (IVF77) v1 genome