CuGenDBv2

Gene ID	IVF0016532
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	chr10:2266746..2268927
RNA-Seq Expression	IVF0016532
Synteny	IVF0016532
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002677 - Ribosomal protein L32p IPR011332 - Zinc-binding ribosomal protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004135164.1 uncharacterized protein LOC101216290 [Cucumis sativus]

3.81e-86

91.97

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRIMRALEGQ GSMLGLKAMAYGLPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ NNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
        ALKPIPVI+RCK CGKVKLPHYYCCSGRPG+QDNSAT
Subjt:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT

XP_008446396.1 PREDICTED: uncharacterized protein LOC103489153 [Cucumis melo]

1.20e-93

99.26

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKAL
        MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPKAL
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKAL

Query:  KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
        KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
Subjt:  KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

7.33e-75

84.56

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQTGSM GLKAMA  LPHSS   G+M  KDS PPLVLPEFN ESD D INNCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA
        ALKPIPVIIRCK CGKVKLPH+YCCSGR GEQDNSA
Subjt:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

1.04e-74

83.82

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQTGSM GLKAM   LPHSS   G+M  KDS PPLVLPEFN ESD DRINNCSIVGFGFPSLSFSGSMELMAVPK+K SPHKR IRN PK
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA
        ALKPIPVIIRCK CGKVKLPH+YCCSGR GEQDNSA
Subjt:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA

XP_038891873.1 uncharacterized protein LOC120081238 [Benincasa hispida]

4.24e-74

83.09

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RALE QTGSMLGLK MA  LPHSS   G++  KDS PPLVLPEFNQESD+DRINNCSI+G GFP+LSFSGSMELMAVPKKKVSP+KR IRN PK
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA
        ALKPIPVI+RCK CGKVKLPHYYCCSGR GEQDNSA
Subjt:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

7.2e-66

91.97

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRIMRALEGQ GSMLGLKAMAYGLPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ NNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
        ALKPIPVI+RCK CGKVKLPHYYCCSGRPG+QDNSAT
Subjt:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT

A0A1S3BEG9 50S ribosomal protein L32, chloroplastic

1.5e-71

99.26

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKAL
        MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPKAL
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKAL

Query:  KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
        KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
Subjt:  KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

1.5e-71

99.26

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKAL
        MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPKAL
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKAL

Query:  KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
        KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT
Subjt:  KPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSAT

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

5.2e-56

83.09

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQTGSM GLKAMA  LPHSS   G++  KDS PPLVLPEFN ESD D INNCSIVGFGFPSLSFSGSMELMAVPK+K SPHKR IRN PK
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA
        ALKPIPVIIRCK CGKVKLPH+YCCSGR GEQDNSA
Subjt:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

2.7e-57

84.56

Show/hide

Query:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQTGSM GLKAMA  LPHSS   G+M  KDS PPLVLPEFN ESD D INNCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA
        ALKPIPVIIRCK CGKVKLPH+YCCSGR GEQDNSA
Subjt:  ALKPIPVIIRCKGCGKVKLPHYYCCSGRPGEQDNSA

SwissProt top hits

e value

%identity

Alignment

Q2N923 50S ribosomal protein L32

3.4e-04

Show/hide

Query:  MAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLPHYYC
        MAVPK+KVSPH+R  R A  +LK +     C  CG++K PH  C
Subjt:  MAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLPHYYC

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

4.1e-29

50.39

Show/hide

Query:  MALRI--MRALEGQTGSMLGLKAMAY--GLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNA
        MALR+  ++    ++  +L  +++++   +P   +G      S PPLVLPEF+Q  ++  +      GFG PS +F+GSMELMAVPKKK+S HKR IRN 
Subjt:  MALRI--MRALEGQTGSMLGLKAMAY--GLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNA

Query:  PKALKPIPVIIRCKGCGKVKLPHYYCCSG
        PKALKP+PVIIRC+ CG+VKLPH++CCSG
Subjt:  PKALKPIPVIIRCKGCGKVKLPHYYCCSG

AT1G69485.1 Ribosomal L32p protein family

9.1e-21

73.77

Show/hide

Query:  MELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLPHYYCCSGR---PGEQDNS
        MELMAVPKKK+S HKR IRN PKA KP PVIIRC+ CG+VKLPH+YCCSG    P EQ NS
Subjt:  MELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLPHYYCCSGR---PGEQDNS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTTATGGTTTACCCCATTCTTCGCATGGGGTCATGGGCCCTAA
GGATTCCCCGCCCCCGCTTGTTCTTCCTGAGTTCAACCAGGAGTCTGATGAAGATAGAATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGCTTATCTTTTTCCG
GGTCTATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGCGCATAAGAAATGCTCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGGTGCAAG
GGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGACCAGGGGAACAGGACAATTCAGCCACATGA

mRNA sequence

Show/hide mRNA sequence

GCATTTGCAAATTCCTAAACCCCGTCGTCTTCTCAGTCTGATTTCCACCGCCGGTATACTGAAATCAGCGTTGGCACTTGGTTTGCTAGCAGCTATGGCGTTGAGGATTA
TGAGGGCGCTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTTATGGTTTACCCCATTCTTCGCATGGGGTCATGGGCCCTAAGGATTCCCCGCCCCCG
CTTGTTCTTCCTGAGTTCAACCAGGAGTCTGATGAAGATAGAATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTCTATGGAGCTCAT
GGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGCGCATAAGAAATGCTCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGGTGCAAGGGTTGTGGTAAAGTGA
AGCTGCCTCACTACTATTGTTGCAGTGGAAGACCAGGGGAACAGGACAATTCAGCCACATGAGGCTATGGAGAGTAGAAAGGGCGGTGAGAGCAATGTCTTCAGTTATAG
AATCCTCCCCATACCTGGGAGCTATAATTTCCTTTTCAGTATTCTTCTTTATTAGATTCTTGAAGTTTCGGTTCTTCTGCAGATTGTATAACAGATTGTTAGATTTCAAG
ATGTTATAACCATTAACTATTGAGCCATATCCTTGCTTTGTGCTATCCAGCAGACTTCAATTTTTCCAAGGTCTGAAATGCACCCTTTTAGCATATGTTTTTCTCTCTTA
AATGCG

Protein sequence

Show/hide protein sequence

MALRIMRALEGQTGSMLGLKAMAYGLPHSSHGVMGPKDSPPPLVLPEFNQESDEDRINNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCK
GCGKVKLPHYYCCSGRPGEQDNSAT

IVF0016532 (gene) of Melon (IVF77) v1 genome