; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0016610 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016610
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr09:15832130..15833173
RNA-Seq ExpressionIVF0016610
SyntenyIVF0016610
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036934.1 uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]1.55e-23493.08Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLIS EGKVF LTAKLCFECTHNIAEYEACIMGLQV  DMSIKKLKVLGDSMLVIHQVKEEWE R AKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]6.12e-24593.95Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQV CDMSIKKLKVLGDSMLVIHQVKEEWETR AKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAAS LHILSAPWPFSLWGMDVIGPIDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]2.46e-23193.37Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGL+V CDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIR+LAMNFFLSGEV YKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDI+EGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

KAA0055609.1 uncharacterized protein E6C27_scaffold222G00930 [Cucumis melo var. makuwa]1.38e-23690.78Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQV CDMSIKKLKVLGDSMLVIHQVKEEWETR AKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KI FDHVPRE+N+MADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKR IRRL MNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDI+EGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR+CKKCQIYMDKIHVAASPLHI SA WPFSLWGMDVIG IDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGH FILVAIDYFTKWIE ASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]2.69e-23391.64Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQV CDMSIKKLKVLGDSMLVIHQVKEEWETR AKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKR IRRL MNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDI+EGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR+CKKCQIYMDKIHVAASPLHI SA WPFSLWGMDVIG IDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGH FILVAIDYFTKWIE ASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H3.3e-18993.08Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLIS EGKVF LTAKLCFECTHNIAEYEACIMGLQV  DMSIKKLKVLGDSMLVIHQVKEEWE R AKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

A0A5A7T1X2 Ribonuclease H4.2e-19293.95Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQV CDMSIKKLKVLGDSMLVIHQVKEEWETR AKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAAS LHILSAPWPFSLWGMDVIGPIDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

A0A5A7T7R4 Ribonuclease H8.2e-18891.64Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGH IGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQV CDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKRTIRRLAMNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIM DI+EGIC THANGHMMARQILRS YYWTTMESDCIKY RECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGHRF LV+IDYFTKWIE AS+CNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

A0A5A7TRL7 Ribonuclease H1.4e-19293.37Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGL+V CDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIR+LAMNFFLSGEV YKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDI+EGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

A0A5D3DMD2 Ribonuclease H2.4e-18791.64Show/hide
Query:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        MLFDG SNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQV CDMSIKKLKVLGDSMLVIHQVKEEWETR AKL               
Subjt:  MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN
        KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEA ENDKR IRRL MNFFLSGEVLYKRN
Subjt:  KISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRN

Query:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK
        HDMVLLRCVDEEEAKQIMTDI+EGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR+CKKCQIYMDKIHVAASPLHI SA WPFSLWGMDVIG IDPK
Subjt:  HDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPK

Query:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP
        ASNGH FILVAIDYFTKWIE ASYCNVTRGVVLKFIKK+LICRYGLP
Subjt:  ASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYGLP

SwissProt top hitse value%identityAlignment
Q4R6I1 Gypsy retrotransposon integrase-like protein 18.6e-1728.65Show/hide
Query:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR
        I  Y +  EY    L +++  IRR A  F    + L+    D    R   V EEE K+++ + +E   G H +G      ++ S YYWT++ +D  ++  
Subjt:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR

Query:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI
         C+ CQ+  + + + A   H+L    P+SL  +D++GP    ++  H + ++  D FTKW+     C+V+   V K I
Subjt:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI

Q5RBK0 Gypsy retrotransposon integrase-like protein 12.9e-1729.78Show/hide
Query:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR
        I  Y +  EY    L +++R IRR A  F    + L+    D    R   V EEE K+++ + +E   G H +G      ++ S YYWT++ +D  ++  
Subjt:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR

Query:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI
         C+ CQ+  + + + A   H+L    P+SL  +D++GP    ++  H + ++  D FTKWI     C+V+   V K I
Subjt:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI

Q66H30 Gypsy retrotransposon integrase-like protein 12.1e-1528.49Show/hide
Query:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR
        I  Y +  EY    L +++  IRR A  F    + L+    D    R   V EEE K+++ + +E   G H +G      ++ S YYWT++ +D  ++  
Subjt:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR

Query:  ECKKCQIYMDKIHVAASP-LHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI
         C+ CQ+    + VA    L ++  PW  S+  +D++GP    +S  H + ++  D FTKW+     C+V+   + K I
Subjt:  ECKKCQIYMDKIHVAASP-LHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI

Q8K259 Gypsy retrotransposon integrase-like protein 12.1e-1527.53Show/hide
Query:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR
        I  Y +  EY    L +++  IRR A  F    + L+    D    R   V EEE K+++ + +E   G H +G      ++ SGYYWT++ +D  ++  
Subjt:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR

Query:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI
         C+ CQ+  + + + A   H+     P+S+  +D++GP    ++  H + ++  D FTKW+     C+V+   + K I
Subjt:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI

Q9NXP7 Gypsy retrotransposon integrase-like protein 18.6e-1729.21Show/hide
Query:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR
        I  Y +  EY    L +++  IRR A  F    + L+    D    R   V EEE K+++ + +E   G H +G      ++ S YYWT++ +D  ++  
Subjt:  IKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYAR

Query:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI
         C+ CQ+  + + + A   H+L    P+SL  +D++GP    ++  H + ++  D FTKWI     C+V+   V K I
Subjt:  ECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFI

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein2.6e-0836.59Show/hide
Query:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRH---AKLK----------I
        FDG S  N    G   VL + +G +     +     T+N AEY A I+GL+   +   K +KV GDS LV  Q+K +W+  H   AKL           +
Subjt:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRH---AKLK----------I

Query:  SFD--HVPREDNRMADALATLAV
        SF+  HV R  N  AD  A LAV
Subjt:  SFD--HVPREDNRMADALATLAV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-1034.15Show/hide
Query:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        FDG S  N    G G VL + +  V     +     T+N+AEY A ++GL+   D   K + VLGDSMLV  QV+  W+T H K+               
Subjt:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAV
             H+ RE N  AD  A  A+
Subjt:  KISFDHVPREDNRMADALATLAV

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-1034.15Show/hide
Query:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------
        FDG S  N    G G VL + +  V     +     T+N+AEY A ++GL+   D   K + VLGDSMLV  QV+  W+T H K+               
Subjt:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKL---------------

Query:  KISFDHVPREDNRMADALATLAV
             H+ RE N  AD  A  A+
Subjt:  KISFDHVPREDNRMADALATLAV

AT5G51080.1 RNase H family protein2.7e-0531.97Show/hide
Query:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLK-------------I
        FDG S  N    G   VL + +G +     +     T+N AEY   I+GL+   +    K+KV  DS LV  Q+K +W+  H  L              +
Subjt:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLK-------------I

Query:  SFD--HVPREDNRMADALATLA
        SF+  HV R  N  AD  A +A
Subjt:  SFD--HVPREDNRMADALATLA

AT5G51080.2 RNase H family protein2.7e-0531.97Show/hide
Query:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLK-------------I
        FDG S  N    G   VL + +G +     +     T+N AEY   I+GL+   +    K+KV  DS LV  Q+K +W+  H  L              +
Subjt:  FDGVS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLK-------------I

Query:  SFD--HVPREDNRMADALATLA
        SF+  HV R  N  AD  A +A
Subjt:  SFD--HVPREDNRMADALATLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTTCGATGGTGTCTCAAATGAGTTGGGACATGGGATTGGAGTTGTGCTAATTTCTCCAGAAGGAAAGGTTTTCCCCCTAACGGCCAAGTTATGTTTTGAATGCAC
TCACAATATCGCTGAATATGAAGCTTGCATTATGGGACTTCAAGTAGTATGTGATATGAGTATTAAGAAGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAG
TCAAGGAAGAATGGGAAACAAGACATGCTAAATTGAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCATTAGCCACTCTGGCAGTGATGTTT
GATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGATGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATTTTGACATTAA
GCAATACATAAAGTGTAGAGAATATCCATATGAAGCTTTAGAAAATGACAAACGCACAATAAGGAGGTTGGCCATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAA
GAAACCACGATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGACAGACATTTATGAAGGAATATGTGGAACACATGCTAATGGACATATGATG
GCTAGACAAATACTTAGATCCGGTTATTATTGGACAACGATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAAAATGTCAAATTTATATGGATAAGATCCATGT
AGCAGCATCTCCATTGCATATCTTGTCAGCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTC
TTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAAGAAACAGCTTATATGTCGTTATGGT
CTCCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTTCGATGGTGTCTCAAATGAGTTGGGACATGGGATTGGAGTTGTGCTAATTTCTCCAGAAGGAAAGGTTTTCCCCCTAACGGCCAAGTTATGTTTTGAATGCAC
TCACAATATCGCTGAATATGAAGCTTGCATTATGGGACTTCAAGTAGTATGTGATATGAGTATTAAGAAGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAG
TCAAGGAAGAATGGGAAACAAGACATGCTAAATTGAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCATTAGCCACTCTGGCAGTGATGTTT
GATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGATGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATTTTGACATTAA
GCAATACATAAAGTGTAGAGAATATCCATATGAAGCTTTAGAAAATGACAAACGCACAATAAGGAGGTTGGCCATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAA
GAAACCACGATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGACAGACATTTATGAAGGAATATGTGGAACACATGCTAATGGACATATGATG
GCTAGACAAATACTTAGATCCGGTTATTATTGGACAACGATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAAAATGTCAAATTTATATGGATAAGATCCATGT
AGCAGCATCTCCATTGCATATCTTGTCAGCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTC
TTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAAGAAACAGCTTATATGTCGTTATGGT
CTCCCATAA
Protein sequenceShow/hide protein sequence
MLFDGVSNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVVCDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLKISFDHVPREDNRMADALATLAVMF
DLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEALENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMM
ARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKQLICRYG
LP