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IVF0016692 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016692
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA ligase
Genome locationchr07:9140488..9140933
RNA-Seq ExpressionIVF0016692
SyntenyIVF0016692
Gene Ontology termsGO:0006266 - DNA ligation (biological process)
GO:0006273 - lagging strand elongation (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003910 - DNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR012309 - DNA ligase, ATP-dependent, C-terminal
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064112.1 DNA ligase 1 isoform X2 [Cucumis melo var. makuwa]1.31e-70100Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
        GG
Subjt:  GG

XP_008444061.1 PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]2.32e-62100Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
        GG
Subjt:  GG

XP_008444062.1 PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]2.32e-62100Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
        GG
Subjt:  GG

XP_022158502.1 DNA ligase 6-like isoform X2 [Momordica charantia]2.36e-5590.2Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKP YYRTAE PDMWFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRSV DRNPEECSTATDI  MFNSQTRKMDV +
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
         G
Subjt:  GG

XP_038878216.1 DNA ligase 6-like isoform X1 [Benincasa hispida]1.21e-5794.06Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGD ILCKKP YY+TAEVPDMWFLPQ VWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRSVPDRNPEECSTA DIAEMFNSQTRKMDVAS
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  G
        G
Subjt:  G

TrEMBL top hitse value%identityAlignment
A0A1S3B9K2 DNA ligase1.2e-52100Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
        GG
Subjt:  GG

A0A1S3BA94 DNA ligase1.2e-52100Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
        GG
Subjt:  GG

A0A5D3DXM0 DNA ligase 1 isoform X21.2e-52100Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
        GG
Subjt:  GG

A0A6J1DXE4 DNA ligase1.3e-4690.2Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKP YYRTAE PDMWFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRSV DRNPEECSTATDI  MFNSQTRKMDV +
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
         G
Subjt:  GG

A0A6J1E130 DNA ligase1.3e-4690.2Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEFFSGDKILCKKP YYRTAE PDMWFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRSV DRNPEECSTATDI  MFNSQTRKMDV +
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Query:  GG
         G
Subjt:  GG

SwissProt top hitse value%identityAlignment
F4HPZ9 DNA ligase 63.4e-4177Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEF+S DKIL KKP YYRT E PDMWF  +VVWEIRGAD TVSPVH A++GLVHP RGIS+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++ S
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

P51892 DNA ligase 11.5e-1742.86Show/hide
Query:  FSGDKILCKKPVYYR--TAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        F  D ++     YYR  +A  PD WF P  VWE++ ADL++SPVH+AA+GLV   +GIS+RFPRF+R   D+ PEE + +  +A+++  Q +  + +S
Subjt:  FSGDKILCKKPVYYR--TAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS

Q42572 DNA ligase 13.1e-1845.35Show/hide
Query:  KILCKKPVYYRTAEV--PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ
        +++     YYR  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR +R   D+ PEE +++  IA+++ +Q
Subjt:  KILCKKPVYYRTAEV--PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ

Q6L195 DNA ligase2.6e-1741.76Show/hide
Query:  GDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMD
        GDKI+ KKP    ++  PD W  P +V EIRGA++TVSPVH  A+ ++    G+++RFPR I+   D+ PE+ +T  +I EM+ +Q + ++
Subjt:  GDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMD

Q9W1H4 DNA ligase 14.5e-1746.67Show/hide
Query:  FSGDKILCKKPVYYR--TAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ
        F G  +      YYR   +  PD WF P  VWE++ ADL++SP+H+AA+G+V   RGIS+RFPRFIR   D+N E  + A  +A M+ SQ
Subjt:  FSGDKILCKKPVYYR--TAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ

Arabidopsis top hitse value%identityAlignment
AT1G08130.1 DNA ligase 12.2e-1945.35Show/hide
Query:  KILCKKPVYYRTAEV--PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ
        +++     YYR  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR +R   D+ PEE +++  IA+++ +Q
Subjt:  KILCKKPVYYRTAEV--PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ

AT1G49250.1 ATP-dependent DNA ligase2.9e-1947.67Show/hide
Query:  KILCKKPVYYRTAE--VPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ
        K++     YY+      PD+W  P  VWE++ ADLTVSPV++ A+G+V P +GIS+RFPR +R   D+NPEE +T+  IAEM+ +Q
Subjt:  KILCKKPVYYRTAE--VPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQ

AT1G66730.1 DNA LIGASE 62.4e-4277Show/hide
Query:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS
        MKEF+S DKIL KKP YYRT E PDMWF  +VVWEIRGAD TVSPVH A++GLVHP RGIS+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++ S
Subjt:  MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAATTTTTTTCTGGGGATAAGATTTTGTGTAAAAAGCCAGTTTATTATCGAACTGCTGAAGTTCCTGATATGTGGTTCTTGCCACAAGTTGTTTGGGAAATTAG
AGGTGCAGACTTAACAGTATCGCCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTGTTCGTGGCATCTCAATCAGGTTTCCAAGATTTATTCGTTCGGTTCCGGATA
GAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAAACGAGGAAAATGGATGTTGCATCAGGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAATTTTTTTCTGGGGATAAGATTTTGTGTAAAAAGCCAGTTTATTATCGAACTGCTGAAGTTCCTGATATGTGGTTCTTGCCACAAGTTGTTTGGGAAATTAG
AGGTGCAGACTTAACAGTATCGCCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTGTTCGTGGCATCTCAATCAGGTTTCCAAGATTTATTCGTTCGGTTCCGGATA
GAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAAACGAGGAAAATGGATGTTGCATCAGGAGGTTGAGCTTATTTTATCGGCTTTTCA
GACAGTTATTGCTTTACCATCAGATGTATATGTGAACTTGTAAATTTTAGAAGTATGGGTTTTAGTTAGTCTCCCTCTGTTTTCATTAGTAAGGCTGTAAATCGATTAGA
ATAGGG
Protein sequenceShow/hide protein sequence
MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG