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IVF0016701 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016701
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr01:10203883..10204365
RNA-Seq ExpressionIVF0016701
SyntenyIVF0016701
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025734.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.68e-8883.02Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREG S S PPVLDGKNYSYWKPRMI  IKTLDGKAWR LVAGYEPPM+T+D VSV KPEVDWTD EEQASVGNARA+NAIFNG+DLNVFK IN C+
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL
        TTKEAW+ILEVAYE TSKVKIS LQLITSKFE LKM++DE VS+YNE VLE+AN+SLLL
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL

KAA0048265.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.17e-102100Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
        TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV

KAA0053604.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.01e-8782.39Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEII+EG S S PP+LDGKNYSYWKPRMI FIKTLDGKAWR L+AGY PPMITV+GVSVPKPEVDWT+AEEQASVGNARALNAIFNG+DLNVFK INFC 
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL
        T KEAW+ LEVAYE TSKVKISRLQLIT KFEA++M++DE VS YN+ VLE ANESLLL
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL

TYK07991.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.02e-103100Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
        TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV

XP_016902964.1 PREDICTED: uncharacterized protein LOC107991959 [Cucumis melo]4.92e-9288.75Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREGLSTSLPPVLD                  DGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLLW
        TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLLW
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLLW

TrEMBL top hitse value%identityAlignment
A0A1S4E413 uncharacterized protein LOC1079919591.1e-7088.75Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREGLSTSLPPVLD                  DGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLLW
        TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLLW
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLLW

A0A5A7TAN7 Gag-pol polyprotein9.7e-7083.65Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREG S S PPV DGKNY YWKPRMI F+KTLD KAWR LVAGYEPPM+TVDGVSVPKP+VDWTDAEEQASVGNARA+NAIFNGMDLNVFK IN C+
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL
        T KEAW+ILEVAYE TSKVKISRLQLITSKFEAL+M++DE VS+YNE VLE+AN+SLLL
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL

A0A5A7U3P0 Gag-pol polyprotein5.5e-81100Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
        TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV

A0A5D3C815 Gag-pol polyprotein5.5e-81100Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
        TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEV

A0A5D3DIW3 Gag-pol polyprotein1.3e-6983.02Show/hide
Query:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS
        MEIIREG + S P VLDGKNYSYWKPRMI FIKTLDGKAWR LV+GY+PPM+TVDG SVPKPEVDWT+AEEQASVGNARA+NAIFNG+DLNVFK IN C+
Subjt:  MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCS

Query:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL
        TTKEAW+IL+VAYE TSKVKISRLQLITSKFEAL+M++DE VSKYNE VLE+AN+SLLL
Subjt:  TTKEAWRILEVAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAATCAGAGAGGGACTTTCAACTTCTCTTCCTCCTGTACTGGATGGTAAAAATTACTCATATTGGAAGCCTCGTATGATATTATTTATTAAAACTTTAGATGG
GAAAGCTTGGAGGACTCTTGTGGCTGGTTATGAACCTCCGATGATTACTGTGGATGGTGTATCAGTTCCGAAACCTGAGGTTGATTGGACTGATGCTGAAGAACAAGCAT
CAGTTGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTATGGACCTAAATGTGTTCAAATTTATAAACTTCTGTAGTACAACCAAAGAAGCATGGAGAATATTGGAA
GTTGCTTATGAAGAAACTTCTAAAGTCAAGATATCCAGATTACAGCTGATAACATCGAAATTTGAAGCATTGAAAATGTCTAAAGATGAATGGGTTTCAAAGTACAATGA
GGGAGTTCTGGAGGTTGCTAATGAATCACTGTTGCTGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAATCAGAGAGGGACTTTCAACTTCTCTTCCTCCTGTACTGGATGGTAAAAATTACTCATATTGGAAGCCTCGTATGATATTATTTATTAAAACTTTAGATGG
GAAAGCTTGGAGGACTCTTGTGGCTGGTTATGAACCTCCGATGATTACTGTGGATGGTGTATCAGTTCCGAAACCTGAGGTTGATTGGACTGATGCTGAAGAACAAGCAT
CAGTTGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTATGGACCTAAATGTGTTCAAATTTATAAACTTCTGTAGTACAACCAAAGAAGCATGGAGAATATTGGAA
GTTGCTTATGAAGAAACTTCTAAAGTCAAGATATCCAGATTACAGCTGATAACATCGAAATTTGAAGCATTGAAAATGTCTAAAGATGAATGGGTTTCAAAGTACAATGA
GGGAGTTCTGGAGGTTGCTAATGAATCACTGTTGCTGTGGTGA
Protein sequenceShow/hide protein sequence
MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVPKPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCSTTKEAWRILE
VAYEETSKVKISRLQLITSKFEALKMSKDEWVSKYNEGVLEVANESLLLW