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IVF0016705 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016705
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:13647572..13647877
RNA-Seq ExpressionIVF0016705
SyntenyIVF0016705
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056239.1 uncharacterized protein E6C27_scaffold226G00030 [Cucumis melo var. makuwa]2.87e-68100Show/hide
Query:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDLVL
        MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDLVL
Subjt:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDLVL

Query:  P
        P
Subjt:  P

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]3.49e-3277.5Show/hide
Query:  LKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        +KIL+ KAFNGNRDAKE E FI +MEQYFKASGTN E+TKVTLA MHLSDDAKLWWRS+VNDIQNG+CTID  ++L K+L
Subjt:  LKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

TYK19296.1 uncharacterized protein E5676_scaffold295G00130 [Cucumis melo var. makuwa]1.25e-3475.9Show/hide
Query:  LSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        L  +KIL+ KAFNGNRDAKE E FI +MEQYFKASGTN E+TKVTLA MHLSDDAKLWWRS+VNDIQNG+CTID  ++L K+L
Subjt:  LSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

WP_217833205.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]6.85e-4068.37Show/hide
Query:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        M  VGNQTPNQ  ++ ++ KI + KAF+GNRDAK+ ENFIFDM+QYFKASGT  E+ KVTLA MHLSDDAKLWWRS+VND+Q+G+CTIDT  +L K L
Subjt:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]2.01e-3566.33Show/hide
Query:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        M  VGNQ PNQA    +KLK+ + K FNGNRDAK+ ENF+FD+EQYFKA+GT  E+ KVTLA MHL+DDAKLWWRS+VNDIQNG+CTI++  +L K+L
Subjt:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

TrEMBL top hitse value%identityAlignment
A0A5A7URV8 Uncharacterized protein1.3e-51100Show/hide
Query:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDLVL
        MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDLVL
Subjt:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDLVL

Query:  P
        P
Subjt:  P

A0A5A7UYE8 Gag/pol protein3.8e-2777.5Show/hide
Query:  LKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        +KIL+ KAFNGNRDAKE E FI +MEQYFKASGTN E+TKVTLA MHLSDDAKLWWRS+VNDIQNG+CTID  ++L K+L
Subjt:  LKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

A0A5D3D6V5 Retrotrans_gag domain-containing protein1.7e-2775.9Show/hide
Query:  LSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        L  +KIL+ KAFNGNRDAKE E FI +MEQYFKASGTN E+TKVTLA MHLSDDAKLWWRS+VNDIQNG+CTID  ++L K+L
Subjt:  LSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

A0A6J1D906 Reverse transcriptase6.2e-3066.33Show/hide
Query:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        M  VGNQ PNQA    +KLK+ + K FNGNRDAK+ ENF+FD+EQYFKA+GT  E+ KVTLA MHL+DDAKLWWRS+VNDIQNG+CTI++  +L K+L
Subjt:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

A0A6J1DK29 uncharacterized protein LOC1110218291.1e-2662.24Show/hide
Query:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL
        M  VGNQ PNQ     +KLK+ + K FNGNR  K+ ENF FD+EQYFK +GT  E  KVTLA MHL+DDAKLWWRS+VNDIQNG+CTI++  +L K+L
Subjt:  MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACAGTGGGGAACCAGACCCCGAATCAAGCATATAGTGTTTTGAGCAAGTTGAAGATCTTGAAACTTAAAGCCTTCAATGGGAACCGCGATGCTAAAGAGTTTGA
GAATTTCATCTTCGATATGGAGCAGTACTTTAAGGCTAGTGGAACCAATTACGAAAAAACCAAGGTGACATTAGCCTTTATGCATCTGTCTGATGATGCAAAACTCTGGT
GGAGGTCGAGAGTGAATGACATCCAAAATGGTCAATGTACCATTGATACTGGGAAGAACTTAAATAAGGACTTAGTTCTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAACAGTGGGGAACCAGACCCCGAATCAAGCATATAGTGTTTTGAGCAAGTTGAAGATCTTGAAACTTAAAGCCTTCAATGGGAACCGCGATGCTAAAGAGTTTGA
GAATTTCATCTTCGATATGGAGCAGTACTTTAAGGCTAGTGGAACCAATTACGAAAAAACCAAGGTGACATTAGCCTTTATGCATCTGTCTGATGATGCAAAACTCTGGT
GGAGGTCGAGAGTGAATGACATCCAAAATGGTCAATGTACCATTGATACTGGGAAGAACTTAAATAAGGACTTAGTTCTTCCATGA
Protein sequenceShow/hide protein sequence
MPTVGNQTPNQAYSVLSKLKILKLKAFNGNRDAKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDIQNGQCTIDTGKNLNKDLVLP