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IVF0016710 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016710
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:17989649..17990245
RNA-Seq ExpressionIVF0016710
SyntenyIVF0016710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]6.01e-9266.96Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQP+RSSSQ+ CS++   L+Y+  EK +VSYILQPRMSSSQICC REGRPLKYVA EKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFC +YI+A
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYR-------------------------------------------QKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGR
        EKVVVSY+LQPR SSSQICYR                                           QK FCLKYIV EKVVVSYML PRMS S+ICC REGR
Subjt:  EKVVVSYMLQPRRSSSQICYR-------------------------------------------QKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGR

Query:  PLKYIAAKKIVVLKYVAAEKIIVSNML
        PLKY+AAKKI+V KYVAA+KIIVSNML
Subjt:  PLKYIAAKKIVVLKYVAAEKIIVSNML

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]2.38e-132100Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

KAA0064215.1 hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]1.01e-12294.44Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRREG PLKYVATEKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQIC  QKDFCLKYIVAEKVV+SYML PRMSSSQICCRREGRPLKY+AAKKIVVLKYVAAEKIIVSNMLKYV+AKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.34e-127100Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

TYK18585.1 hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa]3.01e-12194.44Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRREG PLKYVATEKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQIC  QKDFCLKYIVAEKVV+SYML PRMSSSQICCRREGRPLKY+AAKKIVVLKYVAAEKIIVSNMLKYV+AKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

TrEMBL top hitse value%identityAlignment
A0A5A7SNS6 Uncharacterized protein1.7e-7166.96Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQP+RSSSQ+ CS++   L+Y+  EK +VSYILQPRMSSSQICC REGRPLKYVA EKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFC +YI+A
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYR-------------------------------------------QKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGR
        EKVVVSY+LQPR SSSQICYR                                           QK FCLKYIV EKVVVSYML PRMS S+ICC REGR
Subjt:  EKVVVSYMLQPRRSSSQICYR-------------------------------------------QKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGR

Query:  PLKYIAAKKIVVLKYVAAEKIIVSNML
        PLKY+AAKKI+V KYVAA+KIIVSNML
Subjt:  PLKYIAAKKIVVLKYVAAEKIIVSNML

A0A5A7UEK9 Uncharacterized protein6.3e-103100Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

A0A5A7VE92 Uncharacterized protein1.5e-9694.44Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRREG PLKYVATEKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQIC  QKDFCLKYIVAEKVV+SYML PRMSSSQICCRREGRPLKY+AAKKIVVLKYVAAEKIIVSNMLKYV+AKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

A0A5D3C2C8 Retrotransposon gag protein6.3e-103100Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

A0A5D3D4V9 Uncharacterized protein1.5e-9694.44Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRREG PLKYVATEKI VLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML
        EKVVVSYMLQPRRSSSQIC  QKDFCLKYIVAEKVV+SYML PRMSSSQICCRREGRPLKY+AAKKIVVLKYVAAEKIIVSNMLKYV+AKNVVVSYML
Subjt:  EKVVVSYMLQPRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCATCTCAAATATGTTGTCGTCGAGAAGGTCGTCCCCTCAAATATGTTGCAACTGAGAAGATTATCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCT
CAAACATGTTACAACCGAGAAGATCATCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAA
CCGAGAAGATCGTCGTCTCAAATATGTTACAGACAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCATCCGAGGATGTCATC
GTCTCAAATATGTTGCCGCCGAGAAGGTCGTCCCCTCAAATATATTGCAGCTAAGAAGATCGTAGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATGT
TGAAATATGTTGTAGCCAAGAATGTCGTCGTCTCATATATGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCATCTCAAATATGTTGTCGTCGAGAAGGTCGTCCCCTCAAATATGTTGCAACTGAGAAGATTATCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCT
CAAACATGTTACAACCGAGAAGATCATCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAA
CCGAGAAGATCGTCGTCTCAAATATGTTACAGACAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCATCCGAGGATGTCATC
GTCTCAAATATGTTGCCGCCGAGAAGGTCGTCCCCTCAAATATATTGCAGCTAAGAAGATCGTAGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATGT
TGAAATATGTTGTAGCCAAGAATGTCGTCGTCTCATATATGTTGTAA
Protein sequenceShow/hide protein sequence
MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ
PRRSSSQICYRQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIVSNMLKYVVAKNVVVSYML