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IVF0016743 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016743
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:8433615..8433920
RNA-Seq ExpressionIVF0016743
SyntenyIVF0016743
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036745.1 retrotransposon protein [Cucumis melo var. makuwa]2.13e-6498.02Show/hide
Query:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        ++SHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
Subjt:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

Query:  Q
        Q
Subjt:  Q

KAA0038094.1 retrotransposon protein [Cucumis melo var. makuwa]4.20e-3662.38Show/hide
Query:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        ++SHPA  RLFNK F YYDELAY+F  D+T   F + F D+GSNEPT YKGFDM +GN+EF  +Y+QG DMSQ+DV   +P RTSD +VGLS SKR R S
Subjt:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

Query:  Q
        Q
Subjt:  Q

KAA0060332.1 retrotransposon protein [Cucumis melo var. makuwa]6.30e-3865.35Show/hide
Query:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        ++SHPA   L NKPF YYDEL Y+F RDR M  FA+ FAD+GSNEP GY+GFDM +GN+EFP +YSQGIDMSQ+DV  S+P R S  + G SGSKR RES
Subjt:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

Query:  Q
        Q
Subjt:  Q

KAA0060443.1 retrotransposon protein [Cucumis melo var. makuwa]6.73e-3661Show/hide
Query:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        + SHPA   L NKPF YYDEL Y+F  DR    F EIFAD+GSNEP GY  FD+ +GN+EFP +YSQGID+SQ+DV  S+P RTSD + G SG KR R S
Subjt:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

KAA0066979.1 retrotransposon protein [Cucumis melo var. makuwa]1.61e-3867.68Show/hide
Query:  SHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRESQ
        SHPA   L NKPFSYYDEL Y+F RDRT   F E FAD+G NEP GY+GFDM  GN+EFPF+YSQGIDMSQ+DV   +P R SD   G SGSKR RESQ
Subjt:  SHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRESQ

TrEMBL top hitse value%identityAlignment
A0A5A7T5K2 Retrotransposon protein2.4e-5098.02Show/hide
Query:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        ++SHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
Subjt:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

Query:  Q
        Q
Subjt:  Q

A0A5A7UFM7 Pol protein4.4e-2868.32Show/hide
Query:  QSHPAVNRLFNKPFSYYDELAYMF-RRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        +SHPA  RL NKPF YY +LAY+F   DRTM  F E FA +GSNEP  Y+GFDMP GNK+FP MYSQGID+SQE V  S+P RTSD +VGLSGSKR RES
Subjt:  QSHPAVNRLFNKPFSYYDELAYMF-RRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

Query:  Q
        Q
Subjt:  Q

A0A5A7UWV7 Retrotransposon protein1.8e-2965.35Show/hide
Query:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        ++SHPA   L NKPF YYDEL Y+F RDR M  FA+ FAD+GSNEP GY+GFDM +GN+EFP +YSQGIDMSQ+DV  S+P R S  + G SGSKR RES
Subjt:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

Query:  Q
        Q
Subjt:  Q

A0A5A7VNY5 Retrotransposon protein1.8e-2967.68Show/hide
Query:  SHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRESQ
        SHPA   L NKPFSYYDEL Y+F RDRT   F E FAD+G NEP GY+GFDM  GN+EFPF+YSQGIDMSQ+DV   +P R SD   G SGSKR RESQ
Subjt:  SHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRESQ

A0A5D3D831 Retrotransposon protein2.9e-2761.39Show/hide
Query:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES
        ++SHPA   L NKPFSYYDEL Y+F  DR    FAE F D+GSNEP GY+GFDM +GN+EF  +YSQGIDMSQ+DV  S+P R+S+ + G +GSKR R S
Subjt:  MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRES

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGCATCCTGCAGTGAATAGGCTCTTTAACAAACCATTTTCCTATTACGACGAACTTGCATATATGTTCCGTCGCGATAGGACGATGAGTAACTTCGCTGAGAT
ATTTGCTGACATTGGGTCTAACGAGCCTACCGGATATAAAGGGTTTGACATGCCGAATGGGAACAAAGAGTTCCCATTCATGTACAGTCAGGGGATTGACATGTCCCAGG
AGGATGTAAGCCCATCACAACCTGTTCGCACGTCAGATTGTAAGGTCGGATTGAGTGGATCGAAGAGAAATAGGGAAAGCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCGCATCCTGCAGTGAATAGGCTCTTTAACAAACCATTTTCCTATTACGACGAACTTGCATATATGTTCCGTCGCGATAGGACGATGAGTAACTTCGCTGAGAT
ATTTGCTGACATTGGGTCTAACGAGCCTACCGGATATAAAGGGTTTGACATGCCGAATGGGAACAAAGAGTTCCCATTCATGTACAGTCAGGGGATTGACATGTCCCAGG
AGGATGTAAGCCCATCACAACCTGTTCGCACGTCAGATTGTAAGGTCGGATTGAGTGGATCGAAGAGAAATAGGGAAAGCCAATGA
Protein sequenceShow/hide protein sequence
MQSHPAVNRLFNKPFSYYDELAYMFRRDRTMSNFAEIFADIGSNEPTGYKGFDMPNGNKEFPFMYSQGIDMSQEDVSPSQPVRTSDCKVGLSGSKRNRESQ