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IVF0016793 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016793
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLysM domain-containing protein
Genome locationchr08:2146726..2147336
RNA-Seq ExpressionIVF0016793
SyntenyIVF0016793
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]5.76e-4582.11Show/hide
Query:  MAKATIPIAIFLLAFFLLIFSISVKGR----EVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATI IAIFLLA  LLIF+ISVKGR    EVV  E SLELQCNKAYGVKSGDTCFA+A  FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFFLLIFSISVKGR----EVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]2.70e-3063.16Show/hide
Query:  MAKATIPIA--IFLLAFFLLIFSISVKGREVV---AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL
        MAKA I  +  IFLLAF LLIFSISV+ R        E  LELQCNK YGVK+GDTCF L   FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  MAKATIPIA--IFLLAFFLLIFSISVKGREVV---AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL

ONI10265.1 hypothetical protein PRUPE_4G037900 [Prunus persica]2.26e-2061.02Show/hide
Query:  EPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        +P + L+C   YGVKSGDTCF +A TF L T+ F+ INPNLNC+ALFVGQW+C+N  L+
Subjt:  EPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]1.04e-5598.9Show/hide
Query:  MAKATIPIAIFLLAFFLLIFSISVKGREVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATIPIAIFLLAFFLLIFSISVKG EVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFFLLIFSISVKGREVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]1.42e-4484.62Show/hide
Query:  MAKATIPIAIFLLAFFLLIFSISVKGREVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATI IAIFLLA  LLIF+ISVKG EVV  E SLELQCNKAYGVKSGDTCFA+A  FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFFLLIFSISVKGREVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein5.6e-2263.16Show/hide
Query:  MAKATI--PIAIFLLAFFLLIFSISVKGREVV---AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL
        MAKA I     IFLLAF LLIFSISV+ R        E  LELQCNK YGVK+GDTCF L   FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  MAKATI--PIAIFLLAFFLLIFSISVKGREVV---AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL

A0A0A0KLD2 LysM domain-containing protein3.2e-3382.11Show/hide
Query:  MAKATIPIAIFLLAFFLLIFSISVKG----REVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATI IAIFLLA  LLIF+ISVKG    REVV  E SLELQCNKAYGVKSGDTCFA+A  FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFFLLIFSISVKG----REVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like2.4e-4198.9Show/hide
Query:  MAKATIPIAIFLLAFFLLIFSISVKGREVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
        MAKATIPIAIFLLAFFLLIFSISVKG EVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFFLLIFSISVKGREVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT

A0A6N2B813 LysM domain-containing protein2.5e-1445.92Show/hide
Query:  MAKATIPIAIFLLAFFLLIFSISVKGREVV--------AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL
        MAK    +  F+L   LL+F   V+ +  +        +  P  E++C+K   VK GDTCF ++HTF L  D FN INPNLNC+ALFVGQWLCV+  L
Subjt:  MAKATIPIAIFLLAFFLLIFSISVKGREVV--------AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL

M1C1H7 LysM domain-containing protein3.9e-1547.83Show/hide
Query:  MAKATIPIAIFLLAFFLLIFSISVKGREVV--AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL
        MAK    +  F+L   LL+F   V+ +  +   + P  E++C+K   VK GDTCF ++HTF L +D FN INPNL C+ALFVGQWLCV+  L
Subjt:  MAKATIPIAIFLLAFFLLIFSISVKGREVV--AAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGGCTACCATCCCAATTGCCATTTTCCTATTGGCTTTCTTTCTTCTCATTTTCTCTATTTCTGTAAAAGGTCGTGAGGTTGTTGCGGCAGAACCAAGCTTGGA
GTTGCAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTCTTGCTCACACATTCAAGCTCTCCACCGACCACTTCAATTTTATCAATCCAAATCTCA
ATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGGCTACCATCCCAATTGCCATTTTCCTATTGGCTTTCTTTCTTCTCATTTTCTCTATTTCTGTAAAAGGTCGTGAGGTTGTTGCGGCAGAACCAAGCTTGGA
GTTGCAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTCTTGCTCACACATTCAAGCTCTCCACCGACCACTTCAATTTTATCAATCCAAATCTCA
ATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
Protein sequenceShow/hide protein sequence
MAKATIPIAIFLLAFFLLIFSISVKGREVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT