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IVF0016810 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016810
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr05:17308148..17308399
RNA-Seq ExpressionIVF0016810
SyntenyIVF0016810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049885.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.87e-39100Show/hide
Query:  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEV
        MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEV
Subjt:  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEV

KAA0056630.1 hypothetical protein E6C27_scaffold288G001510 [Cucumis melo var. makuwa]1.35e-0746.97Show/hide
Query:  FEDSFCDPPT------SSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT
        F+DS CDP         +  DA+   V SP+K+VLE+  DD   KG +  SE AGKT  PL PKQT
Subjt:  FEDSFCDPPT------SSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT

KAA0067817.1 hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa]2.13e-0762.5Show/hide
Query:  KDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTS
        KDA LV V SP K+VLE+  DDS LKG QI  EV G+T  P PPKQ S
Subjt:  KDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTS

TYK23147.1 hypothetical protein E5676_scaffold142G001560 [Cucumis melo var. makuwa]1.77e-0744.62Show/hide
Query:  LSQDDFEDSFCDPPT------SSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAP
        L+ D F+DS CDP T       + +D T   + SP+K+ L+++ D+ FLKG QIASE AG+T  P
Subjt:  LSQDDFEDSFCDPPT------SSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAP

TYK29776.1 hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]2.43e-0742.68Show/hide
Query:  DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT
        D+PL +QGD  L QD  +DS CD            ++ TL LV    K +LE+  DD   K  Q+ SE A KTR P PPKQ+
Subjt:  DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT

TrEMBL top hitse value%identityAlignment
A0A5A7TJU0 Uncharacterized protein2.2e-0442.68Show/hide
Query:  DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT
        D+PL +QGD  L QD  +DS CD            ++ TL LV    K +LE+  DD   K  Q+ SE A KTR P PPKQ+
Subjt:  DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT

A0A5A7U8D9 Retrotransposon gag protein1.3e-28100Show/hide
Query:  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEV
        MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEV
Subjt:  MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEV

A0A5A7UNI4 Uncharacterized protein1.7e-0447.06Show/hide
Query:  DDFEDSFCDP------PTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT
        D F+DS CDP         +  DA+   V SP+K+VLE+  DD   KG +  SE AGKT  PL PKQT
Subjt:  DDFEDSFCDP------PTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT

A0A5A7VKU1 Uncharacterized protein1.7e-0455Show/hide
Query:  EDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTS
        +D   DP     KDA LV V SP K+VLE+  DDS LKG QI  EV G+T  P PPKQ S
Subjt:  EDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTS

A0A5D3E1H0 Uncharacterized protein2.2e-0442.68Show/hide
Query:  DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT
        D+PL +QGD  L QD  +DS CD            ++ TL LV    K +LE+  DD   K  Q+ SE A KTR P PPKQ+
Subjt:  DEPLPNQGDVELSQDDFEDSFCD------PPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACCTGATGATGATGAGCCCCTACCTAATCAAGGGGATGTTGAGTTATCCCAAGATGACTTCGAAGATTCTTTTTGCGATCCTCCAACCTCATCTAAAAAAGATGC
GACCTTAGTCCTTGTTAGGTCGCCAACCAAAAAGGTCTTGGAGGAGATTACTGATGACTCATTCCTTAAAGGAAATCAAATCGCCTCTGAGGTAGCAGGCAAGACACGTG
CTCCTTTGCCACCTAAGCAAACAAGCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTACCTGATGATGATGAGCCCCTACCTAATCAAGGGGATGTTGAGTTATCCCAAGATGACTTCGAAGATTCTTTTTGCGATCCTCCAACCTCATCTAAAAAAGATGC
GACCTTAGTCCTTGTTAGGTCGCCAACCAAAAAGGTCTTGGAGGAGATTACTGATGACTCATTCCTTAAAGGAAATCAAATCGCCTCTGAGGTAGCAGGCAAGACACGTG
CTCCTTTGCCACCTAAGCAAACAAGCAATTAA
Protein sequenceShow/hide protein sequence
MLPDDDEPLPNQGDVELSQDDFEDSFCDPPTSSKKDATLVLVRSPTKKVLEEITDDSFLKGNQIASEVAGKTRAPLPPKQTSN