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IVF0016845 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016845
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr06:5735126..5735581
RNA-Seq ExpressionIVF0016845
SyntenyIVF0016845
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.24e-2859.78Show/hide
Query:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKP
        M F+EGNGLSS TS V PKK++ RMP T+  +   KS P+TV LF +GHK FE  D+YFE+F+LH WH PS ++SKYRSGSEL G K R  P
Subjt:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKP

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]9.55e-1639.38Show/hide
Query:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCV--------------------------------------------------------
        SEGNGLS RTS V  +KVR RM  TQ     VKS P TVSLF V                                                        
Subjt:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCV--------------------------------------------------------

Query:  -GHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIANALSKSG
            RFE +D+  +DFSLH  HRPSLVF+KYRSG ELV E+T+ +   IEK+ANAL  SG
Subjt:  -GHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIANALSKSG

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]5.84e-1941.4Show/hide
Query:  LSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTY---------------------------FEDFSLHFWHRPSLVFSKYRSGS
        L  R +  RP+   +     Q F+  VKS PT V LFCVGHKRFE RD+Y                            E FSL+FWHRPS VF KYRS S
Subjt:  LSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTY---------------------------FEDFSLHFWHRPSLVFSKYRSGS

Query:  ELVGEKTREKPETIEKIANALSKSGERSPSVKNNKKGISAKETSQAQEFLVFAPEKC
        E++  +T+ +PETIE +ANAL  SGERS          SA E S    FL    ++C
Subjt:  ELVGEKTREKPETIEKIANALSKSGERSPSVKNNKKGISAKETSQAQEFLVFAPEKC

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]5.00e-1441.79Show/hide
Query:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIAN
        M+FS+GNGLSSRTS V  KK                                        DFSLH WH  S +F +YRSGSELVG +T+ +  TIEKIAN
Subjt:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIAN

Query:  ALSKSGERSPSVKNNKKGISAKETSQAQEFLVFA
        AL  SGERS S        S + +S+  EFLVF+
Subjt:  ALSKSGERSPSVKNNKKGISAKETSQAQEFLVFA

TYK23423.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]6.39e-1247.92Show/hide
Query:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFC--------VGHKRFEHRDTYFEDFSL-----HFWHRPSLVFSKYRSGSELVGE
        SEGNGL+SRTS VR KK RARMPQT +   G KS P  VS  C        +   R     T+     L     H WH P  VF +Y+SGSELVGE
Subjt:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFC--------VGHKRFEHRDTYFEDFSL-----HFWHRPSLVFSKYRSGSELVGE

TrEMBL top hitse value%identityAlignment
A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed5.3e-1741.4Show/hide
Query:  LSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTY---------------------------FEDFSLHFWHRPSLVFSKYRSGS
        L  R +  RP+   +     Q F+  VKS PT V LFCVGHKRFE RD+Y                            E FSL+FWHRPS VF KYRS S
Subjt:  LSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTY---------------------------FEDFSLHFWHRPSLVFSKYRSGS

Query:  ELVGEKTREKPETIEKIANALSKSGERSPSVKNNKKGISAKETSQAQEFLVFAPEKC
        E++  +T+ +PETIE +ANAL  SGERS          SA E S    FL    ++C
Subjt:  ELVGEKTREKPETIEKIANALSKSGERSPSVKNNKKGISAKETSQAQEFLVFAPEKC

A0A5A7VGQ5 Uncharacterized protein9.3e-1439.26Show/hide
Query:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCV--------------------------------------------------------
        SEGNGLS RTS V  +KVR RM  TQ     VKS P TVSLF V                                                        
Subjt:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCV--------------------------------------------------------

Query:  -GHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIANALSKSGERS
            RFE +D+  +DFSLH  HRPSLVF+KYRSG ELV E+T+ +   IEK+ANAL  SG  S
Subjt:  -GHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIANALSKSGERS

A0A5D3BG85 Uncharacterized protein6.7e-1241.79Show/hide
Query:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIAN
        M+FS+GNGLSSRTS V  KK                                        DFSLH WH  S +F +YRSGSELVG +T+ +  TIEKIAN
Subjt:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIAN

Query:  ALSKSGERSPSVKNNKKGISAKETSQAQEFLVFA
        AL  SGERS S        S + +S+  EFLVF+
Subjt:  ALSKSGERSPSVKNNKKGISAKETSQAQEFLVFA

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein5.5e-2259.78Show/hide
Query:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKP
        M F+EGNGLSS TS V PKK++ RMP T+  +   KS P+TV LF +GHK FE  D+YFE+F+LH WH PS ++SKYRSGSEL G K R  P
Subjt:  MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKP

A0A5D3DIK9 DUF4283 domain-containing protein2.1e-1038.78Show/hide
Query:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFC--------VGHKRFEHRDTYFEDFSL-----HFWHRPSLVFSKYRSGSELVGEKTRE
        SEGNGL+SRTS VR KK RARMPQT +   G KS P  VS  C        +   R     T+     L     H WH P  VF +Y+SGSELVGE   +
Subjt:  SEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFC--------VGHKRFEHRDTYFEDFSL-----HFWHRPSLVFSKYRSGSELVGEKTRE

Query:  KP--------ETIEKIANALSKSGERSPSVKNNKKGISAKETSQAQE
        K         +  E I    +K GE     K+   G+  +E S+A++
Subjt:  KP--------ETIEKIANALSKSGERSPSVKNNKKGISAKETSQAQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTCAGCGAAGGAAACGGGCTAAGCTCAAGAACTTCTGGTGTTCGTCCCAAGAAAGTGCGAGCGAGAATGCCTCAGACTCAGCTTTTCTTTTATGGGGTAAAAAG
CAGTCCTACAACTGTTTCTTTGTTTTGTGTTGGTCATAAGCGCTTCGAGCATCGTGACACATACTTCGAGGACTTTAGTCTACATTTCTGGCATCGTCCCTCACTTGTTT
TCTCAAAGTATAGGTCGGGAAGTGAGCTCGTTGGAGAGAAAACTAGGGAGAAACCCGAAACGATCGAAAAGATCGCCAATGCTCTTTCAAAGAGTGGTGAACGCTCGCCC
AGTGTGAAAAACAACAAAAAAGGCATTTCAGCCAAGGAAACGAGTCAAGCTCAAGAATTTCTAGTGTTCGCCCCTGAAAAGTGCGAACGAGAATGCCTCGGACTAAGTTT
TTCTATCATGGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTTCAGCGAAGGAAACGGGCTAAGCTCAAGAACTTCTGGTGTTCGTCCCAAGAAAGTGCGAGCGAGAATGCCTCAGACTCAGCTTTTCTTTTATGGGGTAAAAAG
CAGTCCTACAACTGTTTCTTTGTTTTGTGTTGGTCATAAGCGCTTCGAGCATCGTGACACATACTTCGAGGACTTTAGTCTACATTTCTGGCATCGTCCCTCACTTGTTT
TCTCAAAGTATAGGTCGGGAAGTGAGCTCGTTGGAGAGAAAACTAGGGAGAAACCCGAAACGATCGAAAAGATCGCCAATGCTCTTTCAAAGAGTGGTGAACGCTCGCCC
AGTGTGAAAAACAACAAAAAAGGCATTTCAGCCAAGGAAACGAGTCAAGCTCAAGAATTTCTAGTGTTCGCCCCTGAAAAGTGCGAACGAGAATGCCTCGGACTAAGTTT
TTCTATCATGGGGTAA
Protein sequenceShow/hide protein sequence
MHFSEGNGLSSRTSGVRPKKVRARMPQTQLFFYGVKSSPTTVSLFCVGHKRFEHRDTYFEDFSLHFWHRPSLVFSKYRSGSELVGEKTREKPETIEKIANALSKSGERSP
SVKNNKKGISAKETSQAQEFLVFAPEKCERECLGLSFSIMG