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IVF0016936 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0016936
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationchr12:8947806..8948587
RNA-Seq ExpressionIVF0016936
SyntenyIVF0016936
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031986.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]8.96e-1642.86Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQ---LLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKS--------GG
        ++T DQEI G R ELH LP+  E+ + LAKS+ER  VQ E QQQ     M Y+E ++KG+  T+         I S V+  E+ M E KS        G 
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQ---LLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKS--------GG

Query:  SNYSNQSRFKKVEMSVFSGIDWDSWLLRADCYF
         +  ++S+FKK+EM VF G D +SWL RA+ YF
Subjt:  SNYSNQSRFKKVEMSVFSGIDWDSWLLRADCYF

KAA0052094.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]4.71e-78100Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKK
        METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKK
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKK

Query:  VEMSVFSGIDWDSWLLRADCYF
        VEMSVFSGIDWDSWLLRADCYF
Subjt:  VEMSVFSGIDWDSWLLRADCYF

KAA0055708.1 protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa]3.55e-1640Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGRPIT---LGGSSNKGKSIKSNVE--GGETSMNEIKSGGSNY
        ++  +QEI+  R EL KLPA EEN++L++KSIE    Q+E   MQQQ ++ ++EG+++ + +T   L G+ + G    +  E  GGE  + E K+     
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGRPIT---LGGSSNKGKSIKSNVE--GGETSMNEIKSGGSNY

Query:  SNQSRFKKVEMSVFSGIDWDSWLLRADCYF
         ++S+FKKVE+ +F+G+D D WL +AD YF
Subjt:  SNQSRFKKVEMSVFSGIDWDSWLLRADCYF

KAA0057101.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]9.81e-2361.96Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGG---SSNKGKSIKSNVEGGETSMNEIKSGG
        ++ FD EI G RVELHKLPA EEN     KSI+RL VQ +  ++LLMMYVEG+ KG  IT+GG   S +KGKSI+SNVEGGETS N+ KS G
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGG---SSNKGKSIKSNVEGGETSMNEIKSGG

KAA0061441.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]7.60e-1639.42Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGR---------------PITLGGSSNKGKSIKSNVEGGETSMNEI
        ME+F+QE+ G + EL K+P  E  L  L+K++E + +Q E QQQ ++ Y+E   KGR               P T    S  GK+  S  + GETS    
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGR---------------PITLGGSSNKGKSIKSNVEGGETSMNEI

Query:  KSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADCYF
             N S+QS+FK+VE  VF+G D +SWL RA+ YF
Subjt:  KSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADCYF

TrEMBL top hitse value%identityAlignment
A0A5A7SPQ8 Transposon Ty3-I Gag-Pol polyprotein8.3e-1342.86Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKS--------GG
        ++T DQEI G R ELH LP+  E+ + LAKS+ER  VQ E    QQQ  M Y+E ++KG+  T+         I S V+  E+ M E KS        G 
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKS--------GG

Query:  SNYSNQSRFKKVEMSVFSGIDWDSWLLRADCYF
         +  ++S+FKK+EM VF G D +SWL RA+ YF
Subjt:  SNYSNQSRFKKVEMSVFSGIDWDSWLLRADCYF

A0A5A7UKW4 Protochlorophyllide-dependent translocon component 522.9e-1340Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGRPIT---LGG--SSNKGKSIKSNVEGGETSMNEIKSGGSNY
        ++  +QEI+  R EL KLPA EEN++L++KSIE    Q+E   MQQQ ++ ++EG+++ + +T   L G  S   G    + + GGE  + E K+     
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGRPIT---LGG--SSNKGKSIKSNVEGGETSMNEIKSGGSNY

Query:  SNQSRFKKVEMSVFSGIDWDSWLLRADCYF
         ++S+FKKVE+ +F+G+D D WL +AD YF
Subjt:  SNQSRFKKVEMSVFSGIDWDSWLLRADCYF

A0A5A7UUC3 Transposon Tf2-1 polyprotein isoform X11.9e-1761.96Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGG---SSNKGKSIKSNVEGGETSMNEIKSGG
        ++ FD EI G RVELHKLPA EEN     KSI+RL VQ +  ++LLMMYVEG+ KG  IT+GG   S +KGKSI+SNVEGGETS N+ KS G
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGG---SSNKGKSIKSNVEGGETSMNEIKSGG

A0A5A7V723 Ty3/gypsy retrotransposon protein1.9e-1240Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQV---EMQQQLLMMYVEGVMKGRPIT---LGGSSNK--GKSIKSNVEGGETSMNEIKSGGSNY
        ++  +Q+I   R+EL KLP  EEN++L+ KSIE +  Q+   + QQQ+++ Y+EG+++ + +    L GS +K  G ++ + V  GE S  E +S     
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQV---EMQQQLLMMYVEGVMKGRPIT---LGGSSNK--GKSIKSNVEGGETSMNEIKSGGSNY

Query:  SNQSRFKKVEMSVFSGIDWDSWLLRADCYF
         ++ +FKKVEM +F+G D DSWL RAD YF
Subjt:  SNQSRFKKVEMSVFSGIDWDSWLLRADCYF

A0A5D3BNP7 Transposon Tf2-1 polyprotein isoform X11.0e-58100Show/hide
Query:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKK
        METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKK
Subjt:  METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKK

Query:  VEMSVFSGIDWDSWLLRADCYF
        VEMSVFSGIDWDSWLLRADCYF
Subjt:  VEMSVFSGIDWDSWLLRADCYF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACGTTCGATCAGGAAATTGTTGGTACGAGAGTAGAATTGCATAAATTGCCAGCAACTGAGGAAAATCTTGCACTGTTAGCCAAGAGTATCGAGCGGTTGGAAGT
ACAAGTGGAGATGCAACAACAATTGCTGATGATGTATGTAGAAGGAGTGATGAAAGGACGGCCGATCACGCTTGGAGGATCATCGAACAAAGGAAAATCAATCAAGAGCA
ATGTTGAAGGAGGAGAAACGTCGATGAATGAAATTAAATCAGGAGGAAGCAACTATTCTAATCAGAGTAGGTTTAAGAAGGTTGAGATGTCAGTTTTTAGCGGCATCGAT
TGGGACTCTTGGCTACTTAGAGCGGATTGCTATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAACGTTCGATCAGGAAATTGTTGGTACGAGAGTAGAATTGCATAAATTGCCAGCAACTGAGGAAAATCTTGCACTGTTAGCCAAGAGTATCGAGCGGTTGGAAGT
ACAAGTGGAGATGCAACAACAATTGCTGATGATGTATGTAGAAGGAGTGATGAAAGGACGGCCGATCACGCTTGGAGGATCATCGAACAAAGGAAAATCAATCAAGAGCA
ATGTTGAAGGAGGAGAAACGTCGATGAATGAAATTAAATCAGGAGGAAGCAACTATTCTAATCAGAGTAGGTTTAAGAAGGTTGAGATGTCAGTTTTTAGCGGCATCGAT
TGGGACTCTTGGCTACTTAGAGCGGATTGCTATTTCTAGATACATTAGTTAACGGATTCGGAGAAGATGATTGTAGTTGTTACTAGTTTTGATGGAGCAATGCTAGGTTA
TTATCGATTGCAGGAGGAACAAGAATCTTTCAAAGTTTGGCTGGACTTGTAACAGAGGATGATGATTCGTTTCATATCGGTTAGAGAGGGATCAATCTATGGACGATTCT
TAGCGATTATGCAGAAGACGGTCGTGGAGAAATATCATAGTCTATTTGATAAATTGGTTGTGCCATTACCATAACTACCGAAGAAGGTGCTGGAAGAAATGTTTATGAAT
GGGTGTAGTCCATGGATGTAGGCTAGGGTAGGATGTTGAGAGCTAGTTAGGCTTGCGCATCTGATGAAACTGGCTCAACACGTGGAGAACTTGGAGATAACGAGGAAGGA
AGTGGGCCTGGG
Protein sequenceShow/hide protein sequence
METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGID
WDSWLLRADCYF