CuGenDBv2

Gene ID	IVF0016945
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cleavage and polyadenylation specificity factor subunit 2
Genome location	chr06:459582..468431
RNA-Seq Expression	IVF0016945
Synteny	IVF0016945
Gene Ontology terms	GO:0006378 - mRNA polyadenylation (biological process) GO:0006398 - mRNA 3'-end processing by stem-loop binding and cleavage (biological process) GO:0006508 - proteolysis (biological process) GO:0098789 - pre-mRNA cleavage required for polyadenylation (biological process) GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function)
InterPro domains	IPR001279 - Metallo-beta-lactamase IPR011108 - Zn-dependent metallo-hydrolase, RNA specificity domain IPR022712 - Beta-Casp domain IPR025069 - Cleavage and polyadenylation specificity factor 2, C-terminal IPR027075 - Cleavage and polyadenylation specificity factor subunit 2 IPR035639 - CPSF2, metallo-hydrolase domain IPR036866 - Ribonuclease Z/Hydroxyacylglutathione hydrolase-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140773.1 cleavage and polyadenylation specificity factor subunit 2 [Cucumis sativus]

0.0

95.94

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          +F TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSN APDVGSSHGGAYRDILIDGFVPPST VAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
        MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI WLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

XP_008439247.1 PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Cucumis melo]

0.0

96.62

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          +F TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
        MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

XP_022141034.1 cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Momordica charantia]

0.0

93.5

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Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVD FNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          +F TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        Q+IARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPI+FLTYV+SSTIDYIKSFLEWMSDTIAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFV+WA DAKNLVLFSE+GQF TLARMLQADPPPKAVKVTVSKRVPL GDEL+AYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHG DNDTGDPMIIDASSNA+PDVG SH  AYRDILIDGFVPPSTSVAPMFPFYENTS WDDFGEVINPDDYVIKDEDMDQAA
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
        MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKA  PHKSVLVGDLKMAD+KQFLASKGIQVEFAGGALRCGEYVT+RKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
         DASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

XP_022922464.1 cleavage and polyadenylation specificity factor subunit 2 [Cucurbita moschata]

0.0

93.1

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVD FNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          ++ TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN+PIFFLTYVASSTIDYIKSFLEWMSD+IAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFV+WA DAKNLVLFSERGQFGTLARMLQ+DPPPKAVKVTVSKRVPLTGDEL+AYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHG DNDTGDPMIIDASSN APDV  SHGGAYRDI IDGFVPPSTSV+PMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQ+A
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
         H G DVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI+WLDA+VGKTENGTLSLLPLSKA  PHKSVLVGDLKMADFKQFL+SKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        +DASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

XP_038899782.1 cleavage and polyadenylation specificity factor subunit 2 [Benincasa hispida]

0.0

94.72

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVD FNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          +F TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHG DND GDPMIIDASSN APDVG SHGGA+RDILIDGFVPP TSVAPMFPFYENTS WDDFGEVINPDDYVIKDEDMDQAA
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
        MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTEN TLSLLPLSKA +PHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        TDASQKGGGSGT QVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBF9 Cleavage and polyadenylation specificity factor subunit 2

0.0e+00

95.94

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          +F TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSN APDVGSSHGGAYRDILIDGFVPPST VAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
        MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI WLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

A0A1S3AXY2 Cleavage and polyadenylation specificity factor subunit 2

0.0e+00

96.62

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          +F TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
        MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

A0A6J1CHF7 Cleavage and polyadenylation specificity factor subunit 2

0.0e+00

93.5

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVD FNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          +F TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        Q+IARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPI+FLTYV+SSTIDYIKSFLEWMSDTIAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFV+WA DAKNLVLFSE+GQF TLARMLQADPPPKAVKVTVSKRVPL GDEL+AYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHG DNDTGDPMIIDASSNA+PDVG SH  AYRDILIDGFVPPSTSVAPMFPFYENTS WDDFGEVINPDDYVIKDEDMDQAA
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
        MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKA  PHKSVLVGDLKMAD+KQFLASKGIQVEFAGGALRCGEYVT+RKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
         DASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

A0A6J1E3G2 Cleavage and polyadenylation specificity factor subunit 2

0.0e+00

93.1

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Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVD FNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          ++ TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN+PIFFLTYVASSTIDYIKSFLEWMSD+IAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFV+WA DAKNLVLFSERGQFGTLARMLQ+DPPPKAVKVTVSKRVPLTGDEL+AYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHG DNDTGDPMIIDASSN APDV  SHGGAYRDI IDGFVPPSTSV+PMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQ+A
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
         H G DVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI+WLDA+VGKTENGTLSLLPLSKA  PHKSVLVGDLKMADFKQFL+SKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        +DASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

A0A6J1J863 Cleavage and polyadenylation specificity factor subunit 2

0.0e+00

92.96

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVSVD FNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG  P+          ++ TEPVYRLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QFIARKQVSEFDLFTLDDIDSAFQV+TRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN+PIFFLTYVASSTIDYIKSFLEWMSD+IAKS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK
          KHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFV+WA DAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDEL+AYEEEQNRK
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRK

Query:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA
        KEEALKASLLKEEQSKASHG DNDTGDPMIIDASSN APDV  SHGGAYRDI IDGFVPPSTSV+PMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQ+A
Subjt:  KEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAA

Query:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI
         H G DVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEH+KQHCLKNVCPHVYAPQ+EETI
Subjt:  MHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETI

Query:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV
        DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI+WLDA+VGKTENGTLSLLPLSKA  PHKSVLVGDLKMADFKQFL+SKGIQVEFAGGALRCGEYVTLRKV
Subjt:  DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKV

Query:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        +DA QKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
Subjt:  TDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

SwissProt top hits

e value

%identity

Alignment

O35218 Cleavage and polyadenylation specificity factor subunit 2

1.3e-139

37.02

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PF---------LIFFTEPVYRLGLLTMYD
        M + +++T L GV  E+ L YL+ VD+F FL+DCGW++HF   ++  L +    IDAVL+SHPD LHLG  PF          I+ T PVY++G + MYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PF---------LIFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDG-EDVIYAVDFNHRKERHLNGTILESFVRPAVLIT
         + +R    +F LFTLDD+D+AF  I +L +SQ  +L GKG G+ I P  AGH++GGT+WKI KDG E+++YAVDFNH++E HLNG  LE   RP++LIT
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDG-EDVIYAVDFNHRKERHLNGTILESFVRPAVLIT

Query:  DAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN---YPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGT
        D++NA   QP R+Q+D++    + +TLR +GNVL+ VDTAGRVLEL Q+L+  W  +      Y +  L  V+ + +++ KS +EWMSD + +       
Subjt:  DAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN---YPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGT

Query:  TLFFSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEE
           F  +H++L    S+L   P  PKVVLAS   LE G+S D+F+ W  D KN ++ + R   GTLAR L  +P  K  ++ + KRV L G EL  Y E+
Subjt:  TLFFSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEE

Query:  QNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDG-------FVPPSTSVAPMFPFYENTSAWDDFGEVINPDDY
        +  KKE A K      EQSK    AD D+ D   ++       D  S+H   + D+++ G       F   +    PMFP  E    WD++GE+I P+D+
Subjt:  QNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDG-------FVPPSTSVAPMFPFYENTSAWDDFGEVINPDDY

Query:  VIKDEDMDQAAMHAGGDVDGKLDETAANLILDMK--PSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL---
        ++ +    QA       ++  L      +  D+   P+K VS   ++++K  + Y+D+EGRSDG SIK I++ + P +L++VHG  EA++ L + C    
Subjt:  VIKDEDMDQAAMHAGGDVDGKLDETAANLILDMK--PSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL---

Query:  -KNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW----LDAEVGKTENG-----------------------------------
         K++   VY P++ ET+D TS+   Y+V+L + L+S++ F K  D E+AW    LD  V K + G                                   
Subjt:  -KNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW----LDAEVGKTENG-----------------------------------

Query:  ------------------TLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYY
                          TL  LP  + P  H+SV + + +++DFKQ L  +GIQ EF GG L C   V +R+          + T ++ +EG LC+D+Y
Subjt:  ------------------TLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYY

Query:  KIRELLYSQFYLL
        +IR+LLY Q+ ++
Subjt:  KIRELLYSQFYLL

Q10568 Cleavage and polyadenylation specificity factor subunit 2

3.0e-139

36.56

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PF---------LIFFTEPVYRLGLLTMYD
        M + +++T L GV  E+ L YL+ VD+F FL+DCGW++HF   ++  L +    IDAVL+SHPD LHLG  P+          I+ T PVY++G + MYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PF---------LIFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDG-EDVIYAVDFNHRKERHLNGTILESFVRPAVLIT
         + +R    +F LFTLDD+D+AF  I +L +SQ  +L GKG G+ I P  AGH++GGT+WKI KDG E+++YAVDFNH++E HLNG  LE   RP++LIT
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDG-EDVIYAVDFNHRKERHLNGTILESFVRPAVLIT

Query:  DAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN---YPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGT
        D++NA   QP R+Q+D++    + +TLR +GNVL+ VDTAGRVLEL Q+L+  W  +      Y +  L  V+ + +++ KS +EWMSD + +       
Subjt:  DAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN---YPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGT

Query:  TLFFSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEE
           F  +H++L    S+L   P  PKVVLAS   LE G+S D+F+ W  D KN ++ + R   GTLAR L  +P  K  ++ + KRV L G EL  Y E+
Subjt:  TLFFSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEE

Query:  QNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDG-------FVPPSTSVAPMFPFYENTSAWDDFGEVINPDDY
        +  KKE A K      EQSK    AD D+ D    ++ +    D  S+H   + D+++ G       F   +    PMFP  E    WD++GE+I P+D+
Subjt:  QNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDG-------FVPPSTSVAPMFPFYENTSAWDDFGEVINPDDY

Query:  VIKD---EDMDQAAMHAG-GDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL-
        ++ +    + +++ + +G  + D  +D+  +++     P+K +S   ++++K  + Y+D+EGRSDG SIK I++ + P +L++VHG  EA++ L + C  
Subjt:  VIKD---EDMDQAAMHAG-GDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL-

Query:  ---KNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW----LDAEVGKTENG---------------------------------
           K++   VY P++ ET+D TS+   Y+V+L + L+S++ F K  D E+AW    LD  V K + G                                 
Subjt:  ---KNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW----LDAEVGKTENG---------------------------------

Query:  --------------------TLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCED
                            TL  LP  + P  H+SV + + +++DFKQ L  +GIQ EF GG L C   V +R+          + T ++ +EG LC+D
Subjt:  --------------------TLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCED

Query:  YYKIRELLYSQFYLL
        +Y+IR+LLY Q+ ++
Subjt:  YYKIRELLYSQFYLL

Q652P4 Cleavage and polyadenylation specificity factor subunit 2

1.0e-304

71.39

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPL G Y E PL YL++VD F FL+DCGW D  DP+ LQPL++VA TIDAVL+SH DT+HLG  P+          ++ TEPV+RLG+LT+YD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
         FI+R+QVS+FDLFTLDDID+AFQ + RL YSQNH L+ KGEGIVIAPHVAGH LGGT+WKITKDGEDV+YAVDFNHRKERHLNGT L SFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF
        AYNALNN  Y+RQ+D++F D + K L   G+VLLP+DTAGRVLE++ ILE YW +  L YPI+FLT V++ST+DY+KSFLEWM+D+I+KS   H     F
Subjt:  AYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFF

Query:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR-
          K VT +INK EL+   D PKVVLASMASLE G+SHDIFVD A +AKNLVLF+E+GQFGTLARMLQ DPPPKAVKVT+SKR+PL GDEL AYEEEQ R 
Subjt:  SSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR-

Query:  KKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQA
        KKEEALKASL KEE+ KAS G++    DPM+IDAS++  P    S  G   DILIDGFVPPS+SVAPMFPF+ENTS WDDFGEVINP+DY++K E+MD  
Subjt:  KKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQA

Query:  AMHAGGD-VDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEE
         M   GD +D  LDE +A L+LD  PSKV+SNE+TVQVKCSL YMDFEGRSDGRS+KS+++HVAPLKLVLVHG+AEATEHLK HC KN   HVYAPQ+EE
Subjt:  AMHAGGD-VDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEE

Query:  TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLR
        TIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAW+DAEVGKT++  L+LLP S  PA HKSVLVGDLK+ADFKQFLA+KG+QVEFAGGALRCGEY+TLR
Subjt:  TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLR

Query:  KVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        K+ DA QK G +G+QQ+VIEGPLCEDYYKIRELLYSQFYLL
Subjt:  KVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

Q9LKF9 Cleavage and polyadenylation specificity factor subunit 2

0.0e+00

75.47

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVS+D FNFLIDCGWND FD +LL+PLSRVASTIDAVL+SHPDTLH+G  P+          ++ TEPV+RLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QF++RKQVS+FDLFTLDDIDSAFQ + RLTYSQN+HLSGKGEGIVIAPHVAGH+LGG++W+ITKDGEDVIYAVD+NHRKERHLNGT+L+SFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNAL-NNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLF
        AY+AL  NQ  R+Q+DKEF DTI K L   GNVLLPVDTAGRVLEL+ ILE +W +   ++PI+FLTYV+SSTIDY+KSFLEWMSD+I+KS  T     F
Subjt:  AYNAL-NNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLF

Query:  FSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR
           +HVTLLINK++LDNAP GPKVVLASMASLEAG++ +IFV+WA D +NLVLF+E GQFGTLARMLQ+ PPPK VKVT+SKRVPL G+ELIAYEEEQNR
Subjt:  FSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR

Query:  -KKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQ
         K+EEAL+ASL+KEE++KASHG+D+++ +PMIID  +    DV  SHG AY+DILIDGFVPPS+SVAPMFP+Y+NTS WDDFGE+INPDDYVIKDEDMD+
Subjt:  -KKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQ

Query:  AAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEE
         AMH GGDVDG+LDE  A+L+LD +PSKV+SNEL V V CSL  MD+EGRSDGRSIKS+++HV+PLKLVLVH  AEATEHLKQHCL N+CPHVYAPQ+EE
Subjt:  AAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEE

Query:  TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFA-GGALRCGEYVTL
        T+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AW+D+EVGKTE    SLLP+  A +PHK VLVGDLK+ADFKQFL+SKG+QVEFA GGALRCGEYVTL
Subjt:  TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFA-GGALRCGEYVTL

Query:  RKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        RKV    QKGG SG QQ++IEGPLCEDYYKIR+ LYSQFYLL
Subjt:  RKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

Q9P2I0 Cleavage and polyadenylation specificity factor subunit 2

2.3e-139

36.69

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PF---------LIFFTEPVYRLGLLTMYD
        M + +++T L GV  E+ L YL+ VD+F FL+DCGW++HF   ++  L +    IDAVL+SHPD LHLG  P+          I+ T PVY++G + MYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PF---------LIFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDG-EDVIYAVDFNHRKERHLNGTILESFVRPAVLIT
         + +R    +F LFTLDD+D+AF  I +L +SQ  +L GKG G+ I P  AGH++GGT+WKI KDG E+++YAVDFNH++E HLNG  LE   RP++LIT
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDG-EDVIYAVDFNHRKERHLNGTILESFVRPAVLIT

Query:  DAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN---YPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGT
        D++NA   QP R+Q+D++    + +TLR +GNVL+ VDTAGRVLEL Q+L+  W  +      Y +  L  V+ + +++ KS +EWMSD + +       
Subjt:  DAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLN---YPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGT

Query:  TLFFSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEE
           F  +H++L    S+L   P  PKVVLAS   LE G+S D+F+ W  D KN ++ + R   GTLAR L  +P  K  ++ + KRV L G EL  Y E+
Subjt:  TLFFSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEE

Query:  QNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDG-------FVPPSTSVAPMFPFYENTSAWDDFGEVINPDDY
        +  KKE A K      EQSK    AD D+ D   I+       D  S+H   + D+++ G       F   +    PMFP  E    WD++GE+I P+D+
Subjt:  QNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDG-------FVPPSTSVAPMFPFYENTSAWDDFGEVINPDDY

Query:  VIKD---EDMDQAAMHAG-GDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL-
        ++ +    + +++ + +G  + D  +D+  +++     P+K +S   ++++K  + Y+D+EGRSDG SIK I++ + P +L++VHG  EA++ L + C  
Subjt:  VIKD---EDMDQAAMHAG-GDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL-

Query:  ---KNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW----LDAEVGKTENG---------------------------------
           K++   VY P++ ET+D TS+   Y+V+L + L+S++ F K  D E+AW    LD  V K + G                                 
Subjt:  ---KNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW----LDAEVGKTENG---------------------------------

Query:  --------------------TLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCED
                            TL  LP  + P  H+SV + + +++DFKQ L  +GIQ EF GG L C   V +R+          + T ++ +EG LC+D
Subjt:  --------------------TLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCED

Query:  YYKIRELLYSQFYLL
        +Y+IR+LLY Q+ ++
Subjt:  YYKIRELLYSQFYLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G61010.1 cleavage and polyadenylation specificity factor 73-I

8.4e-04

30.77

Show/hide

Query:  DMDQAAMHAGGDVDGKLDETAANLILDMKPSKV-VSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL
        D   A +  G  V+G L +T  N     +P +V + N LT  +   +HY+ F   +D     + L  + P  ++LVHG A     LKQ  L
Subjt:  DMDQAAMHAGGDVDGKLDETAANLILDMKPSKV-VSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL

AT1G61010.2 cleavage and polyadenylation specificity factor 73-I

8.4e-04

30.77

Show/hide

Query:  DMDQAAMHAGGDVDGKLDETAANLILDMKPSKV-VSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL
        D   A +  G  V+G L +T  N     +P +V + N LT  +   +HY+ F   +D     + L  + P  ++LVHG A     LKQ  L
Subjt:  DMDQAAMHAGGDVDGKLDETAANLILDMKPSKV-VSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCL

AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II

8.6e-25

25.07

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Query:  LVSVDDFNFLIDCGW-------NDHFDPALLQPLSRVASTIDAVLISHPDTLHLGPFLIFFTE------PVY------RLGLLTMYD-QFIARKQVSEFD
        +V+++    + DCG        N + + +L+       + I  ++I+H    H+G  L +FTE      P+Y       L  L + D + +   +  E +
Subjt:  LVSVDDFNFLIDCGW-------NDHFDPALLQPLSRVASTIDAVLISHPDTLHLGPFLIFFTE------PVY------RLGLLTMYD-QFIARKQVSEFD

Query:  LFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRR
        LFT   I +  + +  +   Q   +    E + I  + AGH+LG  +         ++Y  D+N   +RHL    ++  ++  +LI+++  A   +  + 
Subjt:  LFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRR

Query:  QKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFFSSKHVTLLINKS
         +++EF   + K +   G  L+P    GR  EL  +L+ YWE  ++  PI+F + +      Y K  + W S  + +  NTH    F + K         
Subjt:  QKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFFSSKHVTLLINKS

Query:  ELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPP
         L +AP GP V+ A+   L AG+S ++F  WA    NLV        GT+   L A  P
Subjt:  ELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPP

AT3G07530.1 CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712)

1.2e-05

28.26

Show/hide

Query:  ANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSL----NTHGTTLFFSSKHVTLL--INKSELDNAP---
        A G+ L+ +   G VL+L+++L    E  SL  PIF ++ VA   + Y  +  EW+ +   + L     + G   F  +K + L   I+   L  A    
Subjt:  ANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSL----NTHGTTLFFSSKHVTLL--INKSELDNAP---

Query:  -DGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSE
           P +V AS  SL  G S  +   W  D K+L++  +
Subjt:  -DGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSE

AT5G23880.1 cleavage and polyadenylation specificity factor 100

0.0e+00

75.47

Show/hide

Query:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD
        MGTSVQVTPLCGVYNENPLSYLVS+D FNFLIDCGWND FD +LL+PLSRVASTIDAVL+SHPDTLH+G  P+          ++ TEPV+RLGLLTMYD
Subjt:  MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLG--PFL---------IFFTEPVYRLGLLTMYD

Query:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD
        QF++RKQVS+FDLFTLDDIDSAFQ + RLTYSQN+HLSGKGEGIVIAPHVAGH+LGG++W+ITKDGEDVIYAVD+NHRKERHLNGT+L+SFVRPAVLITD
Subjt:  QFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITD

Query:  AYNAL-NNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLF
        AY+AL  NQ  R+Q+DKEF DTI K L   GNVLLPVDTAGRVLEL+ ILE +W +   ++PI+FLTYV+SSTIDY+KSFLEWMSD+I+KS  T     F
Subjt:  AYNAL-NNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLF

Query:  FSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR
           +HVTLLINK++LDNAP GPKVVLASMASLEAG++ +IFV+WA D +NLVLF+E GQFGTLARMLQ+ PPPK VKVT+SKRVPL G+ELIAYEEEQNR
Subjt:  FSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR

Query:  -KKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQ
         K+EEAL+ASL+KEE++KASHG+D+++ +PMIID  +    DV  SHG AY+DILIDGFVPPS+SVAPMFP+Y+NTS WDDFGE+INPDDYVIKDEDMD+
Subjt:  -KKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQ

Query:  AAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEE
         AMH GGDVDG+LDE  A+L+LD +PSKV+SNEL V V CSL  MD+EGRSDGRSIKS+++HV+PLKLVLVH  AEATEHLKQHCL N+CPHVYAPQ+EE
Subjt:  AAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEE

Query:  TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFA-GGALRCGEYVTL
        T+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AW+D+EVGKTE    SLLP+  A +PHK VLVGDLK+ADFKQFL+SKG+QVEFA GGALRCGEYVTL
Subjt:  TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFA-GGALRCGEYVTL

Query:  RKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL
        RKV    QKGG SG QQ++IEGPLCEDYYKIR+ LYSQFYLL
Subjt:  RKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

Sequences

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CDS sequence

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ATGGGGACCTCTGTTCAGGTGACACCACTTTGTGGGGTGTACAATGAAAATCCTCTATCCTATTTGGTCTCCGTTGACGACTTCAACTTCCTTATCGACTGTGGTTGGAA
CGACCACTTCGATCCTGCTCTTCTTCAACCTTTATCCAGGGTGGCATCCACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTAGGGCCCTTCCTTATTT
TTTTCACTGAACCCGTGTACCGATTGGGTCTCCTTACAATGTATGATCAGTTCATCGCAAGGAAGCAAGTGTCGGAGTTTGATCTTTTTACACTGGATGATATCGATTCT
GCTTTCCAAGTTATAACCAGACTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCACCTCATGTGGCTGGGCATCTATTGGGGGGAAC
GCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCTGTTGACTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTCGTGCGACCTG
CTGTATTGATAACTGATGCATATAATGCTCTAAATAATCAGCCTTACAGACGTCAGAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGAGCTAATGGAAAT
GTCTTACTTCCTGTTGATACTGCTGGGCGCGTGCTGGAGCTTATTCAAATTTTGGAATGGTACTGGGAAGAGGAAAGTTTAAATTATCCCATTTTCTTTTTAACTTACGT
TGCATCCAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATACAATAGCAAAGTCTTTGAACACACACGGAACAACGCTTTTCTTCTCAAGTAAACATG
TTACCCTTCTAATCAACAAAAGTGAACTTGATAATGCTCCAGATGGTCCAAAGGTTGTTCTAGCATCAATGGCTAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTT
GACTGGGCAATGGATGCCAAAAACCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGCACTTTGGCCCGCATGCTTCAAGCTGATCCACCTCCCAAAGCTGTTAAGGTAAC
TGTGTCTAAGAGAGTCCCGTTGACTGGAGATGAGCTTATTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGGAGGAACAAT
CTAAAGCATCTCATGGAGCTGATAATGATACTGGCGATCCAATGATCATTGATGCTAGCAGTAATGCAGCACCAGATGTCGGGAGTTCACATGGAGGTGCATACAGAGAC
ATATTAATTGATGGTTTTGTTCCTCCTTCAACCAGCGTTGCTCCAATGTTTCCCTTTTATGAAAACACCTCTGCATGGGATGATTTTGGTGAAGTAATCAATCCTGACGA
TTATGTAATTAAGGATGAAGACATGGACCAAGCAGCAATGCATGCTGGTGGGGACGTTGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTAGATATGAAGCCTT
CGAAAGTTGTATCTAATGAATTGACAGTCCAAGTTAAATGCTCATTGCATTACATGGATTTTGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTT
GCTCCATTGAAGCTTGTTTTGGTGCATGGAACCGCAGAGGCAACCGAGCATCTTAAACAACATTGCCTTAAAAATGTCTGCCCCCATGTCTATGCCCCCCAAGTTGAAGA
AACGATCGATGTTACTTCTGATTTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGTAATGTGCTGTTTAAGAAGCTTGGGGATTATGAAATCGCTTGGCTCG
ATGCTGAAGTAGGGAAGACTGAGAATGGAACGTTGTCTTTACTTCCTCTCTCAAAGGCTCCTGCGCCTCATAAATCTGTTCTTGTTGGTGATTTAAAAATGGCCGACTTC
AAACAATTTCTTGCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCCTACGCAAGGTTACAGATGCAAGTCAAAAGGGTGG
TGGTTCTGGTACACAGCAAGTTGTCATTGAAGGGCCCTTATGTGAGGATTATTATAAAATTCGGGAACTTTTGTATTCACAATTTTATTTGCTATAA

mRNA sequence

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Protein sequence

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MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGPFLIFFTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDS
AFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGN
VLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSLNTHGTTLFFSSKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFV
DWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRD
ILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHV
APLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADF
KQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL

IVF0016945 (gene) of Melon (IVF77) v1 genome