CuGenDBv2

Gene ID	IVF0016968
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ribosomal RNA small subunit methyltransferase NEP1-like
Genome location	chr10:8741046..8745923
RNA-Seq Expression	IVF0016968
Synteny	IVF0016968
Gene Ontology terms	GO:0070475 - rRNA base methylation (biological process) GO:0005730 - nucleolus (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0019843 - rRNA binding (molecular function) GO:0070037 - rRNA (pseudouridine) methyltransferase activity (molecular function)
InterPro domains	IPR005304 - Ribosomal biogenesis, methyltransferase, EMG1/NEP1 IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal IPR029028 - Alpha/beta knot methyltransferases

Homology

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GenBank top hits

e value

%identity

Alignment

KGN44185.1 hypothetical protein Csa_016257 [Cucumis sativus]

2.62e-41

63.19

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP--------PQLF-QKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG---
        MDPYKYR +IVH  A VHIMYSRI M    +AVFIRTD+GI IK+DP         +LF   LSTKAKGN  KL QVV+N VI+YL  NC+K+G      
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP--------PQLF-QKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG---

Query:  -----RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELISG
             R  LKTFSNDVN   LVFVIGAMAHGKIDNENIDELISG
Subjt:  -----RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELISG

TYK19496.1 ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa]

4.59e-44

61.74

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG
        MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP                QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG

Query:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
                   R  LKTFSND+N   LVFVIGAMAHGKID+ENIDELIS
Subjt:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

XP_008448880.1 PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo]

8.57e-45

62.42

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG
        MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP                QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG

Query:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
                   R  LKTFSNDVN   LVFVIGAMAHGKID+ENIDELIS
Subjt:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

XP_022150056.1 ribosomal RNA small subunit methyltransferase NEP1-like [Momordica charantia]

1.08e-33

53.02

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG
        MDPY+YR +I+HE A VHIM+SRICM    EAVFI+TD GI I++DP                QL QK STKAKG R KL Q+V+N + +YL  NCVK+G
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG

Query:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
                   R    TFSNDVN    VFVIGAM H KID E IDE+IS
Subjt:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

XP_031745076.1 ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis sativus]

8.48e-42

61.33

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP----------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKM
        MDPYKYR +IVH  A VHIMYSRI M    +AVFIRTD+GI IK+DP                 QL QKLSTKAKGN  KL QVV+N VI+YL  NC+K+
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP----------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKM

Query:  GEWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
        G           R  LKTFSNDVN   LVFVIGAMAHGKIDNENIDELIS
Subjt:  GEWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K3C1 Uncharacterized protein

7.6e-31

63.19

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP--------PQLF-QKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG---
        MDPYKYR +IVH  A VHIMYSRI M    +AVFIRTD+GI IK+DP         +LF   LSTKAKGN  KL QVV+N VI+YL  NC+K+G      
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP--------PQLF-QKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG---

Query:  -----RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELISG
             R  LKTFS   NDVNLVFVIGAMAHGKIDNENIDELISG
Subjt:  -----RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELISG

A0A1S3BLD0 ribosomal RNA small subunit methyltransferase NEP1-like

3.3e-34

62.42

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG
        MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP                QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG

Query:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
                   R  LKTFS   NDVNLVFVIGAMAHGKID+ENIDELIS
Subjt:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

A0A315A5E9 Ribosomal RNA small subunit methyltransferase NEP1-like

2.1e-20

43.84

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Query:  MDPYKYRRNIVHEDAFVHIMYSRIC----MEAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG
        +DPYKYR +IVHE A   IM +R+C    + AV+I+TD+G+ IK++P                QL QKLS K+ G R +L +VV+N + ++L  N +K+G
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRIC----MEAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG

Query:  ----EWGRYNLKTFSNDVND-VNLVFVIGAMAHGKIDNENIDELIS
                 +L+ + +DV+D VNLVFV+GAMAHG+ID+EN D++IS
Subjt:  ----EWGRYNLKTFSNDVND-VNLVFVIGAMAHGKIDNENIDELIS

A0A5D3D7D3 Ribosomal RNA small subunit methyltransferase NEP1-like

4.3e-34

61.74

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG
        MDPYKYR +IVHE A VHIMYSRICM    +AVF+RTD+G+ IK+DP                QL QKLSTKAKGNR KL QVV+N VI+YL  NCVK+G
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG

Query:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
                   R  LKTFS   ND+NLVFVIGAMAHGKID+ENIDELIS
Subjt:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

A0A6J1DAB0 ribosomal RNA small subunit methyltransferase NEP1-like

4.3e-26

53.02

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Query:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG
        MDPY+YR +I+HE A VHIM+SRICM    EAVFI+TD GI I++DP                QL QK STKAKG R KL Q+V+N + +YL  NCVK+G
Subjt:  MDPYKYRRNIVHEDAFVHIMYSRICM----EAVFIRTDKGIFIKIDP---------------PQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMG

Query:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
                   R    TFS   NDVN VFVIGAM H KID E IDE+IS
Subjt:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

SwissProt top hits

e value

%identity

Alignment

O35130 Ribosomal RNA small subunit methyltransferase NEP1

1.9e-07

27.89

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Query:  DPYKYRRNIVHEDAFVHI--MYSRICMEAVFIRTDKGIFIKIDPP---------------QLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG
        DP + R +I H+   + +    +R  +  V+I T K + I+++P                QL  KLS +A    +KL +V++N V  +    C+K+G   
Subjt:  DPYKYRRNIVHEDAFVHI--MYSRICMEAVFIRTDKGIFIKIDPP---------------QLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG

Query:  RYNLKTFS-NDVNDVN--------LVFVIGAMAHGKIDNENIDELIS
             +FS  D++D+         +VFV+GA AHGK+  E  ++++S
Subjt:  RYNLKTFS-NDVNDVN--------LVFVIGAMAHGKIDNENIDELIS

Q92979 Ribosomal RNA small subunit methyltransferase NEP1

4.3e-07

27.97

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Query:  DPYKYRRNIVHEDAFVHI--MYSRICMEAVFIRTDKGIFIKIDPP---------------QLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG
        DP + R +I H+   + +    +R  +  V+I T K + I+++P                QL  KLS +A    +KL +V++N V  +    C+K+G   
Subjt:  DPYKYRRNIVHEDAFVHI--MYSRICMEAVFIRTDKGIFIKIDPP---------------QLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWG

Query:  RYNLKTFSNDVNDV-----NLVFVIGAMAHGKIDNENIDELIS
         +++   S DV ++      +VFV+GA AHGK+  E  ++++S
Subjt:  RYNLKTFSNDVNDV-----NLVFVIGAMAHGKIDNENIDELIS

Arabidopsis top hits

e value

%identity

Alignment

AT3G57000.1 nucleolar essential protein-related

5.6e-10

33.56

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Query:  DPYKYRRNIVHEDAFVHIMYSRI----CMEAVFIRTDKGIFIKIDPP---------------QLFQKLSTKAKGNRRKLSQVVRNLVIK-YLHFNCVKMG
        +P  YR +I H+ A + I+ S +     ++AV++RT+KG+  ++ P                QL QKLS  A  +R KL + V+N + + +L  N  ++G
Subjt:  DPYKYRRNIVHEDAFVHIMYSRI----CMEAVFIRTDKGIFIKIDPP---------------QLFQKLSTKAKGNRRKLSQVVRNLVIK-YLHFNCVKMG

Query:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS
                   + +L T  +D  D + VFV+GAMAHGKID   IDE +S
Subjt:  EWG--------RYNLKTFSNDVNDVNLVFVIGAMAHGKIDNENIDELIS

Sequences

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CDS sequence

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ATGGATCCATACAAGTATAGACGTAATATAGTTCATGAGGATGCTTTTGTCCATATCATGTATTCTCGAATTTGTATGGAGGCGGTATTCATAAGAACTGACAAAGGAAT
TTTCATTAAAATTGACCCTCCTCAATTGTTCCAAAAGCTTAGCACTAAAGCCAAAGGCAATCGTAGAAAACTATCGCAAGTGGTTAGAAATCTCGTGATCAAATACTTAC
ATTTCAATTGCGTGAAGATGGGTGAGTGGGGTCGTTACAACCTCAAAACGTTTAGCAACGATGTCAATGATGTCAATCTAGTATTTGTGATTGGAGCAATGGCTCATGGC
AAAATTGACAACGAAAACATAGATGAATTGATATCAGGTTACTCTTTTGTAAGCTATTTAAATAATTGTTTCTCCCTTTAA

mRNA sequence

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Protein sequence

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MDPYKYRRNIVHEDAFVHIMYSRICMEAVFIRTDKGIFIKIDPPQLFQKLSTKAKGNRRKLSQVVRNLVIKYLHFNCVKMGEWGRYNLKTFSNDVNDVNLVFVIGAMAHG
KIDNENIDELISGYSFVSYLNNCFSL

IVF0016968 (gene) of Melon (IVF77) v1 genome