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IVF0017048 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017048
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSOSS complex subunit B-like protein
Genome locationchr02:639317..641732
RNA-Seq ExpressionIVF0017048
SyntenyIVF0017048
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]1.38e-55100Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]1.43e-55100Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]1.79e-5193.02Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        G+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]4.41e-5293.02Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        G+ECDVVEPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MVFVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]7.98e-5598.84Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSNKYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
TrEMBL top hitse value%identityAlignment
A0A0A0LW03 Uncharacterized protein4.2e-42100Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A1S3BPN4 SOSS complex subunit B homolog4.2e-42100Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A5D3CIR3 SOSS complex subunit B-like protein4.2e-42100Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A6J1HAL0 SOSS complex subunit B homolog5.7e-3993.02Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        G+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A6J1HZ66 SOSS complex subunit B homolog2.2e-3891.86Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        G+ECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS KYVKESV+SPYSRIFPPIR
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
SwissProt top hitse value%identityAlignment
A6QLK2 SOSS complex subunit B11.0e-0541.79Show/hide
Query:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
        D +GS  +    D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
Q3SWT1 SOSS complex subunit B12.8e-0637.76Show/hide
Query:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTIN-SNKYVK--ESVLSPYSRIFPP
        D +GS  +    D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T   SNK V+   S  +P +   PP
Subjt:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTIN-SNKYVK--ESVLSPYSRIFPP
Q5PRC7 SOSS complex subunit B28.0e-0644.78Show/hide
Query:  DSSGSLP-AMGDEC-DVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
        D SGS+  ++ DE   +++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  DSSGSLP-AMGDEC-DVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
Q8R2Y9 SOSS complex subunit B16.1e-0638.2Show/hide
Query:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS-NKYVKESVLSP
        D +GS  +    D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T  + NK V+ +  SP
Subjt:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS-NKYVKESVLSP
Q9BQ15 SOSS complex subunit B11.0e-0541.79Show/hide
Query:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
        D +GS  +    D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  DSSGS--LPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein3.7e-3064.71Show/hide
Query:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI
        GDECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  N  +Y++  V+S YSRIFPP+
Subjt:  GDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATCACTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGAGATGAGTGCGATGTTGTTGAGCCGAGTGACATTATACGGTTAACGAATGGGATATT
TTCGTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGA
TCCACTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
AACAGTTCTCTCTCTATTAGTAGTTGAATTTTGCAATGGTTAGGGAATAAAAATTATATACGAAGTCATCTTCTGAAAATTAAACAACAGTGTCAAAAGGAATTAGAAAA
TGTTGTTAATTGTGTAGTTGCAAATGTTAGCAACATTAAAATATATTAGTTTGAATGGCCCAACTTTACAGGTTTCTATAATTAAAACCATACATTCCCTTTTTTACTTT
TCTTCTTGTTCCTTCAAAGTAAAACAAACATTGGATATAGACAAACATCTTCAACAAAAATCAATTTTGTTTAATCTACTTCTCTATCAAATTTGAATCAAAACAATTAC
TCCAACATGTTGTTTTGAGAAAACGACACAATCGACCCAAACGATTGCGAGATAGATGAAAAAGGAAAATGATACAAATGTGAATTTGTATGGGTGAGTAAGAAAAGATT
CTAGAAATCTACAGACACCAAATATCGAAGATTCCAAATGCACAATTTCATCAACGGAATCAAATGGTGGAGGAATGGAAGAAATTAAAGGGTAGGATATCCTTTCACAT
TTTGGAGTTCCAATAAGTCTAAGTTAAACCTCTAGTTATCTTCCCCGTCGGATTTGAGCTTCAGTTCGTATAAATCTCCACTCAATTTTTACATTTGTCCTCTTCGGGCG
AGTAAGATTCAAGGCAGATAAATGATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAATTCATAGTTTTGGAGAAAGGCATGACAAC
GATGGAAGGACAAAACAAGGTATGCCAATCACTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGAGATGAGTGCGATGTTGTTGAGCCGAGTGACATTAT
ACGGTTAACGAATGGGATATTTTCGTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAG
AGACACCAAATATGAGTGAGATCCACTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTATTCTCGCATCTTTCCTCCCATTCGT
TGATAGTCTTATGGTGGTTGTAGACCAAACTTGAGAAAGAAAGGTCAAGGAATTAGTAGATTTTTGAAGATGCATTTCGCATTATGTTTGTAATGGTGTGGAAGAAGTGA
AAATTGGATAGATTTAATATGCGGATTAAATTTATTTTTTAAATTTTCTAATTGAATTGAAACCATAAAATT
Protein sequenceShow/hide protein sequence
MPITGGRRDSSGSLPAMGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR