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IVF0017057 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017057
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:4137956..4138395
RNA-Seq ExpressionIVF0017057
SyntenyIVF0017057
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.05e-6072.6Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----
        MFND VPL DSH+QDI  +YSQGVHMS DE+FGIRA QASER+N SSGSKRK+GS+HYE VEVI S  EFGNDQLK I +WPKEKRATEVELR EV    
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----

Query:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                   AKLMQILFRSVEAIEG LSIPT+LK EYCNILL+N
Subjt:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.50e-7283.56Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----
        MFN DVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRA QASERKNCSSGSKRKQGS+HYETVEVI+S IEFGNDQLKAIANWPKEKRATEVELRAEV    
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----

Query:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                   AKL+QILFRSVEAIEG LSIPTE K EYCNILLQN
Subjt:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]7.16e-5969.86Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAK--
        MFND VPL DSH +DIP MYSQGV MS DEMFG RA QASER+NCSS SKRKQGS+HYETVEVIRS ++FGNDQLKAIA+W KEKRA +VELRA V K  
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAK--

Query:  -------------LMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                     ++QILF SVE IEG LSIPTELK EYCN+LL+N
Subjt:  -------------LMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

KAA0063227.1 retrotransposon protein [Cucumis melo var. makuwa]6.89e-6397.03Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLM
        MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV K +
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLM

Query:  Q
        Q
Subjt:  Q

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.12e-6776.71Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----
        MFND +PL DSHD+DIP MYSQGVHMSPDEMFGIRA QASER+NCSS SKRK+GSE YETVEVIRSV+EFGN+QLKAIA+WPKEKRA EVE+RA+V    
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----

Query:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                   AKLMQILFRS+EAIEG LSIPTELK EYCNILLQN
Subjt:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859535.7e-5276.71Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----
        MFND +PL DSHD+DIP MYSQGVHMSPDEMFGIRA QASER+NCSS SKRK+GSE YETVEVIRSV+EFGN+QLKAIA+WPKEKRA EVE+RA+V    
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----

Query:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                   AKLMQILFRS+EAIEG LSIPTELK EYCNILLQN
Subjt:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

A0A5A7SQU2 Putative nuclease HARBI12.7e-5783.56Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----
        MFN DVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRA QASERKNCSSGSKRKQGS+HYETVEVI+S IEFGNDQLKAIANWPKEKRATEVELRAEV    
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----

Query:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                   AKL+QILFRSVEAIEG LSIPTE K EYCNILLQN
Subjt:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

A0A5A7U0H7 Retrotransposon protein5.7e-5276.71Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----
        MFND +PL DSHD+DIP MYSQGVHMSPDEMFGIRA QASER+NCSS SKRK+GSE YETVEVIRSV+EFGN+QLKAIA+WPKEKRA EVE+RA+V    
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----

Query:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                   AKLMQILFRS+EAIEG LSIPTELK EYCNILLQN
Subjt:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

A0A5A7V8A4 Retrotransposon protein5.6e-4797.03Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLM
        MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV K +
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLM

Query:  Q
        Q
Subjt:  Q

A0A5D3BZU3 Retrotransposon protein1.2e-4672.6Show/hide
Query:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----
        MFND VPL DSH+QDI  +YSQGVHMS DE+FGIRA QASER+N SSGSKRK+GS+HYE VEVI S  EFGNDQLK I +WPKEKRATEVELR EV    
Subjt:  MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEV----

Query:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN
                   AKLMQILFRSVEAIEG LSIPT+LK EYCNILL+N
Subjt:  -----------AKLMQILFRSVEAIEGSLSIPTELKSEYCNILLQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAATGACGACGTTCCACTCGATGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGC
TCAAGCAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGTGAACATTATGAAACGGTAGAGGTGATCAGGAGTGTAATAGAATTTGGAAATGATC
AATTAAAGGCAATTGCAAATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTTGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATT
GAGGGATCCTTGTCGATTCCAACAGAACTTAAATCGGAGTATTGCAATATTCTCTTGCAAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTAATGACGACGTTCCACTCGATGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGC
TCAAGCAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGTGAACATTATGAAACGGTAGAGGTGATCAGGAGTGTAATAGAATTTGGAAATGATC
AATTAAAGGCAATTGCAAATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTTGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATT
GAGGGATCCTTGTCGATTCCAACAGAACTTAAATCGGAGTATTGCAATATTCTCTTGCAAAATTAG
Protein sequenceShow/hide protein sequence
MFNDDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKEKRATEVELRAEVAKLMQILFRSVEAI
EGSLSIPTELKSEYCNILLQN