CuGenDBv2

Gene ID	IVF0017103
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr08:29541140..29541541
RNA-Seq Expression	IVF0017103
Synteny	IVF0017103
Gene Ontology terms	GO:0006749 - glutathione metabolic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004364 - glutathione transferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]

1.80e-74

98.37

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRL
        DSPSVQDVMSLLLTQESQIES++
Subjt:  DSPSVQDVMSLLLTQESQIESRL

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]

1.48e-69

91.87

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M EDILNQMLH TSAKQIW+TLQGIYSSRYLAKAMQFKNKLHNMKKG +SLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQS+IS+ISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRL
        DSPSVQD MSLLLTQESQIES++
Subjt:  DSPSVQDVMSLLLTQESQIESRL

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.04e-59

83.87

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M E+ILNQMLHC SAK+IW+TLQGI+SSRYLA+AMQFKNKLHN+KKG + LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQSMISVISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRLL
        DSPSVQ+VMSLLLTQESQ ES+L+
Subjt:  DSPSVQDVMSLLLTQESQIESRLL

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

2.48e-64

82.26

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M E+ILNQM+HC SAK+IW TLQGI+SSRYLA+AMQFKNKLHN+KKG +SLKEYFLKIQQCVDALASINKP+S+DDHILYIL GLG +YQSMIS+ISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRLL
        DSPS+Q+VMSLLLTQESQ ES+L+
Subjt:  DSPSVQDVMSLLLTQESQIESRLL

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.04e-59

83.87

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M E+ILNQMLHC SAK+IW+TLQGI+SSRYLA+AMQFKNKLHN+KKG + LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQSMISVISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRLL
        DSPSVQ+VMSLLLTQESQ ES+L+
Subjt:  DSPSVQDVMSLLLTQESQIESRLL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUB3 Putative glutathione S-transferase isoform X1

4.9e-59

98.37

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRL
        DSPSVQDVMSLLLTQESQIES++
Subjt:  DSPSVQDVMSLLLTQESQIESRL

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-50

83.87

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M E+ILNQMLHC SAK+IW+TLQGI+SSRYLA+AMQFKNKLHN+KKG + LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQSMISVISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRLL
        DSPSVQ+VMSLLLTQESQ ES+L+
Subjt:  DSPSVQDVMSLLLTQESQIESRLL

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

9.3e-50

82.26

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M E+ILNQM+HC SAK+IW TLQGI+SSRYLA+AMQFKNKLHN+KKG +SLKEYFLKIQQCVDALASINKP+S+DDHILYIL GLG +YQSMIS+ISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRLL
        DSPS+Q+VMSLLLTQESQ ES+L+
Subjt:  DSPSVQDVMSLLLTQESQIESRLL

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.2e-50

83.87

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M E+ILNQMLHC SAK+IW+TLQGI+SSRYLA+AMQFKNKLHN+KKG + LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQSMISVISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRLL
        DSPSVQ+VMSLLLTQESQ ES+L+
Subjt:  DSPSVQDVMSLLLTQESQIESRLL

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon

2.1e-54

91.87

Show/hide

Query:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART
        M EDILNQMLH TSAKQIW+TLQGIYSSRYLAKAMQFKNKLHNMKKG +SLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQS+IS+ISART
Subjt:  MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISART

Query:  DSPSVQDVMSLLLTQESQIESRL
        DSPSVQD MSLLLTQESQIES++
Subjt:  DSPSVQDVMSLLLTQESQIESRL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.0e-08

30.84

Show/hide

Query:  TSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLL
        T+A QIW+TL+ IY++       Q + +L    KG  ++ +Y   +    D LA + KP+  D+ +  +L  L  EY+ +I  I+A+   P++ ++   L
Subjt:  TSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLL

Query:  LTQESQI
        L  ES+I
Subjt:  LTQESQI

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

6.7e-08

22.22

Show/hide

Query:  TSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLL
        ++++ IW  ++  + +   A+A++  ++L     G + + +Y+ K+++  D+L +++ P++  + ++Y+L GL  ++ ++I+VI  R   PS  D  ++L
Subjt:  TSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLL

Query:  LTQESQIE
          +E +++
Subjt:  LTQESQIE

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

6.4e-11

29.73

Show/hide

Query:  CTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSL
        CT A+ +W +L+ ++     A+A+QF+N+L       +S+ EY  K++   D L +++ PIS    ++++L GL  +Y  +++VI  ++  PS  +  S+
Subjt:  CTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSL

Query:  LLTQESQIESR
        LL +ES++ ++
Subjt:  LLTQESQIESR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTGAAGACATCTTGAATCAAATGCTCCATTGTACATCTGCAAAACAAATTTGGCAAACGTTACAAGGTATCTACTCCTCTCGATATTTAGCTAAGGCTATGCAGTT
CAAAAACAAGCTCCATAATATGAAAAAGGGAGTCATATCTTTAAAGGAATATTTTCTGAAAATTCAGCAATGTGTTGATGCTTTAGCCTCCATTAATAAACCTATATCAA
CTGATGATCACATATTGTATATCTTAGCTGGATTAGGAAATGAATATCAGTCTATGATATCGGTTATTTCTGCTCGTACTGATTCTCCTTCTGTTCAAGATGTTATGTCA
CTCTTATTGACTCAAGAATCACAGATTGAAAGTAGATTACTAGTGAGGTCTCTTTACCTACTGTCAACATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMS
LLLTQESQIESRLLVRSLYLLST

IVF0017103 (gene) of Melon (IVF77) v1 genome