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IVF0017121 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017121
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr08:22230649..22231314
RNA-Seq ExpressionIVF0017121
SyntenyIVF0017121
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041824.1 retrotransposon protein [Cucumis melo var. makuwa]3.19e-5994.34Show/hide
Query:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
        +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEE     GTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
Subjt:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV

Query:  LKLNPH
        LKLNPH
Subjt:  LKLNPH

KAA0047184.1 retrotransposon protein [Cucumis melo var. makuwa]7.70e-5155.15Show/hide
Query:  ESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGNK----------------------------------
        ESVLRDAFV  L+PALQAEV+ RHPQTLEECMKEAQLV D NLALKLAREELGL+E KS E  GNK                                  
Subjt:  ESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGNK----------------------------------

Query:  ---------------GLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLK
                       GLCFRCNEKYSH H+C +  K+ELMLF+LNEEES GEEGTS+E    +VELK LDIAEG   EL+T+M  SSKGT++ K
Subjt:  ---------------GLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLK

TYK05346.1 retrotransposon protein [Cucumis melo var. makuwa]6.20e-6599.06Show/hide
Query:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
        +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
Subjt:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV

Query:  LKLNPH
        LKLNPH
Subjt:  LKLNPH

TYK30161.1 retrotransposon protein [Cucumis melo var. makuwa]1.85e-4856.78Show/hide
Query:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------
        MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE KS E        GN                           
Subjt:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------

Query:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVL
                        KGL FRCNEKYSH H+CKVKEKRELMLF+LNEEE   EE     N  E+V LK L++AEG   ELK IM LSSKGT++ K VL
Subjt:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVL

XP_016900785.1 PREDICTED: uncharacterized protein LOC107991020 [Cucumis melo]3.12e-4956.78Show/hide
Query:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------
        MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE KS E        GN                           
Subjt:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------

Query:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVL
                        KGL FRCNEKYSH H+CKVKEKRELMLF+LNEEE   EE     N  E+V LK L++AEG   ELK IM LSSKGT++ K VL
Subjt:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVL

TrEMBL top hitse value%identityAlignment
A0A5A7TEG2 Retrotransposon protein8.1e-4694.34Show/hide
Query:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
        +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNE     EEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
Subjt:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV

Query:  LKLNPH
        LKLNPH
Subjt:  LKLNPH

A0A5A7UQT2 Retrotransposon protein1.7e-4054.34Show/hide
Query:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------
        MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE KS E        GN                           
Subjt:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------

Query:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVLM
                        KGL FRCNEKYSH H+CKVKEKRELMLF+LNEEE   E     EN  E+V LK L++AEG   ELK IM LSSKGT++ K VL+
Subjt:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVLM

Query:  DNEVVVLRGVRGLVRFVLK
           VVVL     +  F+ K
Subjt:  DNEVVVLRGVRGLVRFVLK

A0A5D3C4Q7 Retrotransposon protein2.4e-5099.06Show/hide
Query:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
        +KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV
Subjt:  NKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFV

Query:  LKLNPH
        LKLNPH
Subjt:  LKLNPH

A0A5D3E1L1 Retrotransposon protein1.7e-4054.82Show/hide
Query:  ESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGN-----------------------------------
        ESVLRDAFV  L+PALQAEV+ RHPQTLEECMKEAQLV D NLALKLAREELGL+E KS E  GN                                   
Subjt:  ESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGN-----------------------------------

Query:  --------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVL
                      KGLCFRCNEKYSH H+C +  K+ELMLF+LNEEES GEEGTS+E    +VELK LDIAEG   EL+T+M  SSKGT++ K  L
Subjt:  --------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVL

A0A5D3E3K6 Retrotransposon protein1.7e-4054.34Show/hide
Query:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------
        MAESVLRDAFVTSLE ALQAEVI+RHPQTLE+CMKEAQLVND NL LKLAREELGLLE KS E        GN                           
Subjt:  MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDI------GN---------------------------

Query:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVLM
                        KGL FRCNEKYSH H+CKVKEKRELMLF+LNEEE   E     EN  E+V LK L++AEG   ELK IM LSSKGT++ K VL+
Subjt:  ----------------KGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSKENSGEIVELKHLDIAEG--FELKTIMDLSSKGTVRLKVVLM

Query:  DNEVVVLRGVRGLVRFVLK
           VVVL     +  F+ K
Subjt:  DNEVVVLRGVRGLVRFVLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGC
ACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGAT
GCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGAGCATCGGGGAAGAGGGCACATCAAAG
GAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGT
GTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAAGTGTTCTAAGAGATGCTTTTGTAACTAGTTTGGAACCTGCCCTTCAAGCTGAAGTTATTAATAGACACCCACAAACCTTGGAGGAATGTATGAAAGAAGC
ACAACTAGTAAACGACCCTAACTTAGCTTTGAAGCTTGCGAGAGAAGAGTTGGGGTTGCTGGAACCAAAGAGTAGGGAAGACATTGGCAACAAAGGGTTATGTTTTAGAT
GCAATGAGAAATACTCCCACGACCATAAGTGCAAGGTTAAGGAGAAGAGGGAACTAATGCTTTTCCTTCTAAATGAGGAAGAGAGCATCGGGGAAGAGGGCACATCAAAG
GAAAATAGTGGAGAAATAGTTGAGTTAAAACATTTAGACATTGCTGAAGGGTTTGAGCTCAAAACGATCATGGACCTCTCATCTAAGGGCACCGTGAGGTTGAAAGTGGT
GTTGATGGATAATGAAGTGGTGGTGCTTAGGGGTGTTCGTGGTTTGGTTCGGTTTGTTTTGAAGCTAAACCCGCACTAA
Protein sequenceShow/hide protein sequence
MAESVLRDAFVTSLEPALQAEVINRHPQTLEECMKEAQLVNDPNLALKLAREELGLLEPKSREDIGNKGLCFRCNEKYSHDHKCKVKEKRELMLFLLNEEESIGEEGTSK
ENSGEIVELKHLDIAEGFELKTIMDLSSKGTVRLKVVLMDNEVVVLRGVRGLVRFVLKLNPH