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IVF0017179 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017179
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:13616613..13617025
RNA-Seq ExpressionIVF0017179
SyntenyIVF0017179
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049603.1 retrotransposon protein [Cucumis melo var. makuwa]3.01e-61100Show/hide
Query:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
Subjt:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

KAA0050378.1 retrotransposon protein [Cucumis melo var. makuwa]1.02e-4677.66Show/hide
Query:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        QR+ EL+VIHMALEC ND+LRTIV+WPACAL NDNHVR+EFF IL EM ELTSLDR LLQRHLLS MDD+ GFVLMP+DER+GFCRVI+RD+ +
Subjt:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

KAA0066016.1 retrotransposon protein [Cucumis melo var. makuwa]5.90e-4978.95Show/hide
Query:  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+ELTSLDR LLQRHLLS MDDM+GFVLMP++ERKGFCRVI+RD+SK
Subjt:  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

TYK05827.1 retrotransposon protein [Cucumis melo var. makuwa]3.71e-4974.76Show/hide
Query:  DLRLRVGPDQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRD
        +L+ + G +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+ELTSLDR LLQRHLLS MDDM+GFVLMP++ERKGFCRVI+RD
Subjt:  DLRLRVGPDQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRD

Query:  VSK
        +SK
Subjt:  VSK

TYK29656.1 retrotransposon protein [Cucumis melo var. makuwa]2.35e-4271.28Show/hide
Query:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        QREV+++ IH+AL+  N++L+ I EWPACALVNDNHVR EFF IL EM ELTSLDR LLQRHLLS MDD+RGFVLMP+DER GFCRV++RD+++
Subjt:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

TrEMBL top hitse value%identityAlignment
A0A5A7V026 Retrotransposon protein7.5e-3374.47Show/hide
Query:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        QREVE+ VIHM LEC ND+L+ I EWPAC L NDNHV QEFF ILHEM ELT LDR+LLQRHLLSHM DMRGF  MP DER  FCRVI+RD+S+
Subjt:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

A0A5A7VI32 Retrotransposon protein1.3e-3778.95Show/hide
Query:  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+ELTSLDR LLQRHLLS MDDM+GFVLMP++ERKGFCRVI+RD+SK
Subjt:  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

A0A5D3BV29 Retrotransposon protein1.4e-3479.35Show/hide
Query:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDV
        QR+ EL+VIHMALEC ND+LRTIV+WPACAL NDNHVR+EFF IL EM ELTSLDR LLQRHLLS MDD+ GFVLMP+DER+GFCRVI+RD+
Subjt:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDV

A0A5D3C1X3 Retrotransposon protein1.3e-3778.95Show/hide
Query:  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+ELTSLDR LLQRHLLS MDDM+GFVLMP++ERKGFCRVI+RD+SK
Subjt:  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

A0A5D3CVN5 Retrotransposon protein1.2e-46100Show/hide
Query:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
        QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
Subjt:  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACGAGGAGTTCCCATCAATGTATAGCCAGGGGATTGATATGTCCTAGGAAGATGTACGCACATCACGACCTGCGTCTGAGGGTAGGGCCGGATCAACGAGAGGT
CGAGCTTGATGTCATACATATGGCGCTGGAGTGTATGAACGACGAACTTAGGACGATTGTGGAGTGGCCTGCATGTGCCCTTGTCAATGACAACCATGTGCGACAGGAAT
TCTTTCACATATTGCATGAGATGACGGAACTAACGAGTTTGGATAGGACGTTGTTGCAAAGGCACCTTTTGTCTCATATGGACGACATGCGGGGTTTCGTACTGATGCCT
AAGGATGAGAGGAAGGGCTTTTGTAGAGTCATCGTACGAGACGTCTCCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAACGAGGAGTTCCCATCAATGTATAGCCAGGGGATTGATATGTCCTAGGAAGATGTACGCACATCACGACCTGCGTCTGAGGGTAGGGCCGGATCAACGAGAGGT
CGAGCTTGATGTCATACATATGGCGCTGGAGTGTATGAACGACGAACTTAGGACGATTGTGGAGTGGCCTGCATGTGCCCTTGTCAATGACAACCATGTGCGACAGGAAT
TCTTTCACATATTGCATGAGATGACGGAACTAACGAGTTTGGATAGGACGTTGTTGCAAAGGCACCTTTTGTCTCATATGGACGACATGCGGGGTTTCGTACTGATGCCT
AAGGATGAGAGGAAGGGCTTTTGTAGAGTCATCGTACGAGACGTCTCCAAATAG
Protein sequenceShow/hide protein sequence
MGTRSSHQCIARGLICPRKMYAHHDLRLRVGPDQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMP
KDERKGFCRVIVRDVSK