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IVF0017234 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017234
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSplicing factor subunit
Genome locationtig00000135:937394..939960
RNA-Seq ExpressionIVF0017234
SyntenyIVF0017234
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006428364.1 uncharacterized protein At4g14342 [Citrus clementina]4.11e-5897.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_006489711.1 uncharacterized protein At4g14342 [Citrus sinensis]1.01e-58100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_024045677.1 uncharacterized protein At4g14342 [Citrus clementina]2.89e-5898.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_041007902.1 uncharacterized protein At4g14342 isoform X1 [Juglans microcarpa x Juglans regia]2.89e-5898.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

XP_042942701.1 uncharacterized protein At4g14342-like [Carya illinoinensis]5.22e-58100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

TrEMBL top hitse value%identityAlignment
A0A0A0L732 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A1S3AX72 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A2I4DYR2 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

A0A5D3D0R6 Splicing factor subunit2.2e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

V4RHN1 Uncharacterized protein5.0e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENESIGREHYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143421.1e-4391.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 53.5e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9BWJ5 Splicing factor 3B subunit 53.5e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9LW64 Uncharacterized protein At3g233251.1e-4391.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 58.2e-2865.06Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R  +N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 107.6e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 107.6e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGCGATAGATTTAACATTAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCCGTGAACAT
TCAGCGCGATAGCTATGCATCATATGTTGGACATTATCCCATTCTAGCTTACTTTGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAA
TGCTGTTACCTTGCGGCCTCCCTCCAGAAAGGGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATATCGTAGAATGTGACAATAACCTATAATAACGTCACAATCCAATACTTTATTTCAAGTCTCACTTGCATTTCTACACGTTTCAACTTTGTTTGATATATCAACAGATT
TTATTTCAAACATAATTTTAAAATATTTTTGAAAGGTCAAAAAATAATATTATCTATATATTTATTATTTTTTGGATAAAAGAAGACGTAGAATTTTGACGGTGTCTTAT
GTGACCTTGCTCGTTCTGTAGTGAATTTAAGAATCGGATCGCGCCATTTTTCTACTCCTATCGGTTCTTCCCCAATTCGAACATGCAGGCCAGCGATAGATTTAACATTA
ATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCCGTGAACATTCAGCGCGATAGCTATGCATCATATGTT
GGACATTATCCCATTCTAGCTTACTTTGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTGTTACCTTGCGGCCTCCCTCCAGA
AAGGGAAGATGATTGAGATTTGAGATGTTATGAGGTCGTACCGTAATTAGAGTTGTAAACTCTGGATCGTTATGTGGGCTCAAAGAGCATTTTCTTTTGTTAGATAACTC
TGCTACAAAGTGACTAATGGGAAATGCGAACTATTTTATCTTGTAATGCTCTTGTTTGATGAAGAATCAGTTTCCAACTAATCTACAGGACTATATACTGTAATCTATCA
TTCTCATCATTTATTTCAAGTAAAAGGTCTATTTCGGTTATAGTCTGGAGAACTCTTCCATTTGTTGATGTATAATTCTGCTTCACCTTGAACTAAGTGTTAATTGTTTT
TGTCTTTTTGTCGACAAGAACATGAACTTAATTTGATAGCTACGGATGCTGGATTTGGTTCAGTCAGTTAATTATTATTCTAAGTCGGT
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD