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IVF0017237 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017237
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionE3 ubiquitin-protein ligase RNF34
Genome locationtig00001929:14761..17285
RNA-Seq ExpressionIVF0017237
SyntenyIVF0017237
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domainsIPR027921 - NOP protein chaperone 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147238.2 uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]2.72e-11894.55Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRH SKDLL+LERKDLS+SSLESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]1.13e-126100Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

XP_011650372.1 uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]6.04e-11692.72Show/hide
Query:  MRHASKDLLHLERKDLSTSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQ
        MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQ
Subjt:  MRHASKDLLHLERKDLSTSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]8.44e-10083.01Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRHASKDLL LERKDL +SSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRV+DFLGV+SEANKKLQ+D+K++A+KYDIEAL+GNESEVI+LDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRP
        LGIADLHTPEAVAAAESAIIGN PVIPL CSSS    ESESEESSDDSITSD+++NDNEKSD QNTD  NRLSVKLKRS SR+A+CRS+S+ KGKS KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRP

Query:  KIQVLS
        KI  LS
Subjt:  KIQVLS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]4.01e-10488.67Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRH SKDLL+LERKDLS+SSLESSLLVCKKNSTSKEP RNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMD+K+NA+KYDIEALDGNES+VI+LDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSS-ESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQ
        LGIADLHTPEAVAAAESAIIGN PVIPLTCSSS ESESEESSDDSITS+ +N+DNEKSDDQNTD SNR SVKLKRSNSRK SCRSKSKGK KS+KRPKI 
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSS-ESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQ

Query:  VLS
         LS
Subjt:  VLS

TrEMBL top hitse value%identityAlignment
A0A0A0L448 Uncharacterized protein4.3e-9194.55Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRH SKDLL+LERKDLS+SSLESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

A0A1S3BJW4 uncharacterized protein LOC1034908381.8e-97100Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF341.8e-97100Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X12.2e-7481.46Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRHASKDLL LERKDL +SS ESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRV+DFLGV+SEANKKLQ+D+K++A+KYDIEAL+G+ESEVI+LDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSS---ESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPK
        LGIADLHTPEAVAAAESAIIGN PVI L CSSS   ESESEESSDDSITSD++++DNEKSD+QNTD  NRLSVKLKR  SRK +CRS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTCSSS---ESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPK

Query:  IQVLS
        I  LS
Subjt:  IQVLS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X14.7e-7783.01Show/hide
Query:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM
        MRHASKDLL LERKDL +SSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRV+DFLGV+SEANKKLQ+D+K++A+KYDIEAL+GNESEVI+LDLM
Subjt:  MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVAAAESAIIGNHPVIPLTC----SSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRP
        LGIADLHTPEAVAAAESAIIGN PVIPL C    SSSESESEESSDDSITSD+++NDNEKSD QNTD  NRLSVKLKRS SR+A+CRS+S+ KGKS KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNHPVIPLTC----SSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRP

Query:  KIQVLS
        KI  LS
Subjt:  KIQVLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71430.1 unknown protein5.5e-2244.64Show/hide
Query:  KDLLHLERKDLSTSS-LESSLLVC---KKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLML
        KDLL LE K+ S+SS ++S+LL+C    K     E     KP   P  KS +LG+++ FLGV++EANKK    S+ N + Y+IEAL GNESE+I++DLML
Subjt:  KDLLHLERKDLSTSS-LESSLLVC---KKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLML

Query:  GIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLS
        G+ADL+TPEAV+AAE+AI G  P          +ES +SS D    D  ++++E  + ++ +CS + S
Subjt:  GIADLHTPEAVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCATGCTAGCAAGGATCTTCTGCATTTGGAGCGGAAGGATTTATCCACTTCATCTTTAGAATCTTCACTGCTAGTTTGTAAAAAAAACTCAACATCCAAGGAGCC
TTGTCGGAATGAAAAACCCATTACAGAACCCGCTTCAAAAAGCTTAGTATTGGGAAGAGTCCAAGACTTTTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGG
ATTCAAAGGAAAATGCTGATAAATATGATATCGAAGCCCTCGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCACACTCCTGAA
GCTGTGGCTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAG
TGATCACGATAACAATGACAATGAAAAGAGCGATGATCAGAATACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCGAATTCTAGAAAAGCAAGCTGTAGAA
GTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAA
mRNA sequenceShow/hide mRNA sequence
CTCAACTATCCATAAAAACGCCGCTAGTTTTCGCAGACCCATTACTTTTCTTAAACCCTACTTCACGCGTTCAGCCATTGCGTATCCAACCTGACGCCGTCCCAGTGGGT
GCCGGAAGCCTTCCGACGTCTATTCAACTCTCCCTTCCTTCCTCACAGTCGCCGGAAAAGTGCTTCCGGCTGCTGCTTTCACGGCCGACGCCCGACCTTTGCTGTTGTGA
CTAGCTAGAAGAAGGGAAAGATGCGGCATGCTAGCAAGGATCTTCTGCATTTGGAGCGGAAGGATTTATCCACTTCATCTTTAGAATCTTCACTGCTAGTTTGTAAAAAA
AACTCAACATCCAAGGAGCCTTGTCGGAATGAAAAACCCATTACAGAACCCGCTTCAAAAAGCTTAGTATTGGGAAGAGTCCAAGACTTTTTGGGAGTAATATCAGAAGC
TAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGATAAATATGATATCGAAGCCCTCGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTG
CTGATCTTCACACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGT
AGTGATGATAGTATTACCAGTGATCACGATAACAATGACAATGAAAAGAGCGATGATCAGAATACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCGAATTC
TAGAAAAGCAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATGATCCATCTTCTGATCAGACCTGTTTGC
GTCAATATGGATGCATTGTGGTTTGAAAGTTTCTGTTCATGCTCGATGTCGTTGGGGGCGGGGGGTATATGAAGTTTCTGAAGCTTGCTCTGCCAAAATCTCATAGGTTG
TGATTGCGAGCCTAGTTCTTTGAGCTTGGGCAGTATGACCCGACTTTTGCTCGGCCTTGAGATATTTCTCTCTTCAACTTTATCACAATTTCAAGTGCTGGTAAGGTACC
GTTTCTATGCATTTCTATTAGGAAATCTATTGGATTTTAAGTTGTAACTACTCTTGGTCAGTTTCACAATTTTGGTTTGTATACTTGATGTCAAACTTCGATGTTTCAAG
AATGGCCCTTTATAATACATGTGTTGTAGCTTCGAAGGAGAGTTAAATAGTTTTGGC
Protein sequenceShow/hide protein sequence
MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPE
AVAAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKSKKRPKIQVLS