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IVF0017253 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017253
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr08:8490847..8491379
RNA-Seq ExpressionIVF0017253
SyntenyIVF0017253
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041673.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.84e-8399.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.60e-8399.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.60e-8399.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.45e-8298.35Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

TYK28077.1 polyprotein [Cucumis melo var. makuwa]2.05e-8298.35Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWL AYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

TrEMBL top hitse value%identityAlignment
A0A0A0LWK6 Uncharacterized protein8.6e-7086.11Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSV EVC Q+FPHGFNFLPEDLSKTRTFYE+ILVDSKSAEITH+PDKNDPSKIIYSKLRIF+VLTPSYWKQGMFVG++FS PFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHSC--STFVPPFPTKYLFVTTFEDV
        NYRDYTKAWYI+FWLQAYNHSC  STF+P  PTKYL V++ +DV
Subjt:  NYRDYTKAWYIVFWLQAYNHSC--STFVPPFPTKYLFVTTFEDV

A0A5A7UVN1 Retrotransposable element Tf22.0e-6699.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

A0A5A7V6D1 Retrotransposable element Tf22.0e-6699.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

A0A5A7VIK9 Retrotransposable element Tf25.8e-6698.35Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

A0A5D3C4Q3 Retrotransposable element Tf22.0e-6699.17Show/hide
Query:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
        MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH+PDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY
Subjt:  MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSY

Query:  NYRDYTKAWYIVFWLQAYNHS
        NYRDYTKAWYIVFWLQAYNHS
Subjt:  NYRDYTKAWYIVFWLQAYNHS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAAC
CAGGACTTTTTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATATCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTC
GTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTAC
ATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAAC
CAGGACTTTTTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATATCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTC
GTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTAC
ATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG
Protein sequenceShow/hide protein sequence
MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHIPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWY
IVFWLQAYNHSCSTFVPPFPTKYLFVTTFEDV