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IVF0017307 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017307
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:5318493..5318988
RNA-Seq ExpressionIVF0017307
SyntenyIVF0017307
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]1.23e-4858.78Show/hide
Query:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY
        N+ A+TIDS IK+LKR FHAI  M+GP  S F WNDE KCI+ EK+VFDDWV+SH   KGLLN  FPHYDELSY+F +D    GR E+FA+VGSN P GY
Subjt:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY

Query:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
          F A+  +D +   M+ +GL+M PD++MGT
Subjt:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

KAA0051864.1 retrotransposon protein [Cucumis melo var. makuwa]1.05e-75100Show/hide
Query:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
        GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
Subjt:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP

Query:  DKIMGTLLDK
        DKIMGTLLDK
Subjt:  DKIMGTLLDK

KAA0052248.1 retrotransposon protein [Cucumis melo var. makuwa]1.31e-4958.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G N+ A+TIDS IK+LKR FH ++ M+GP  S FRWNDE KCI+IEK  F+DWVKSH   KGLL  LFPHYDELSY+FG+D  M  +VETFA++G N P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
         Y  F A+   DM+   M+ QGL+M PD++MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

KAA0066570.1 retrotransposon protein [Cucumis melo var. makuwa]8.00e-4958.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+  K+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
        GY  F AD   D + P M+ QGL+M PD +MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

TYK15304.1 retrotransposon protein [Cucumis melo var. makuwa]7.03e-5057.66Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK
        GY  F AD   D + P M+ QGL+M PD +MGT + +
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein7.7e-3958.78Show/hide
Query:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY
        N+ A+TIDS IK+LKR FHAI  M+GP  S F WNDE KCI+ EK+VFDDWV+SH   KGLLN  FPHYDELSY+F +D    GR E+FA+VGSN P GY
Subjt:  NILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGY

Query:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
          F A+  +D +   M+ +GL+M PD++MGT
Subjt:  RGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

A0A5A7U941 Retrotransposon protein2.3e-59100Show/hide
Query:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
        GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP
Subjt:  GPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMP

Query:  DKIMGTLLDK
        DKIMGTLLDK
Subjt:  DKIMGTLLDK

A0A5A7VHC6 Retrotransposon protein5.9e-3958.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+  K+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
        GY  F AD   D + P M+ QGL+M PD +MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

A0A5D3BSM9 Retrotransposon protein3.5e-3958.65Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G N+ A+TIDS IK+LKR FH ++ M+GP  S FRWNDE KCI+IEK  F+DWVKSH   KGLL  LFPHYDELSY+FG+D  M  +VETFA++G N P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT
         Y  F A+   DM+   M+ QGL+M PD++MGT
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGT

A0A5D3CWJ7 Retrotransposon protein1.2e-3957.66Show/hide
Query:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE
        G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDWVKSH + KGLLN  FPHYDE  Y+FG+D    GR ++FA+VGSN P 
Subjt:  GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPE

Query:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK
        GY  F AD   D + P M+ QGL+M PD +MGT + +
Subjt:  GYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGTCGTAACATCCTTGCTACGACTATTGATAGTCATATAAAAATGCTAAAGAGAAGGTTCCATGCTATATCCGCGATGCAGGGCCCGTTTTACAGTAGTTTTAG
ATGGAACGATGAACTGAAGTGCATTATTATAGAGAAGGATGTGTTCGACGATTGGGTGAAGAGTCATTCTATTGTGAAGGGCCTACTAAACATATTATTTCCCCATTACG
ACGAACTTTCCTACATCTTTGGGAGAGATTGTGTGATGAGAGGGCGTGTGGAGACATTCGCCAATGTCGGGTCGAATGTGCCTGAAGGGTATAGAGGATTTCCCGCTGAC
GATGGCAACGATATGGAGATCCCTAGTATGTTCATTCAGGGACTAGACATGATGCCTGACAAAATAATGGGCACTCTACTCGACAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGTCGTAACATCCTTGCTACGACTATTGATAGTCATATAAAAATGCTAAAGAGAAGGTTCCATGCTATATCCGCGATGCAGGGCCCGTTTTACAGTAGTTTTAG
ATGGAACGATGAACTGAAGTGCATTATTATAGAGAAGGATGTGTTCGACGATTGGGTGAAGAGTCATTCTATTGTGAAGGGCCTACTAAACATATTATTTCCCCATTACG
ACGAACTTTCCTACATCTTTGGGAGAGATTGTGTGATGAGAGGGCGTGTGGAGACATTCGCCAATGTCGGGTCGAATGTGCCTGAAGGGTATAGAGGATTTCCCGCTGAC
GATGGCAACGATATGGAGATCCCTAGTATGTTCATTCAGGGACTAGACATGATGCCTGACAAAATAATGGGCACTCTACTCGACAAGTAA
Protein sequenceShow/hide protein sequence
MLGRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPAD
DGNDMEIPSMFIQGLDMMPDKIMGTLLDK