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IVF0017348 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017348
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPHD finger protein ALFIN-LIKE 1-like
Genome locationtig00195433:72432..73837
RNA-Seq ExpressionIVF0017348
SyntenyIVF0017348
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR021998 - Alfin, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041041.1 PHD finger protein ALFIN-LIKE 1-like [Cucumis melo var. makuwa]4.45e-2152.04Show/hide
Query:  SFPSLSALGSSALYRVSE-------NAIIQIFRLRPLAALVLALAYDAGEFYGPCDPG--------------EGSLCLYGHPNETWEVRWHEQKRIGY
        SFP    +  +A++ + E       N + +IFRLRPLAALVLALAYDAGEFYGPCDPG              EGSLCLYGHPNETWEV       I +
Subjt:  SFPSLSALGSSALYRVSE-------NAIIQIFRLRPLAALVLALAYDAGEFYGPCDPG--------------EGSLCLYGHPNETWEVRWHEQKRIGY

KAA0046503.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.64e-3359.66Show/hide
Query:  MSTFFISFQILGPFCCRGCFCLLTLSTSFPSLSA------LGSS-------------ALYRVSENAIIQ------IFRLRPLAALVLALAYDAGEFYGPC
        MS+F+ISFQ LGPFCCRGCFCLL+ S SFPSLSA      +G S             ++YR + + +++       FRL PLAALVLALAYD GEFY PC
Subjt:  MSTFFISFQILGPFCCRGCFCLLTLSTSFPSLSA------LGSS-------------ALYRVSENAIIQ------IFRLRPLAALVLALAYDAGEFYGPC

Query:  DPGEGSLCLYGHPNETWEV
        DPGE SLCLYGHPNETWEV
Subjt:  DPGEGSLCLYGHPNETWEV

KAG7017222.1 PHD finger protein ALFIN-LIKE 1 [Cucurbita argyrosperma subsp. argyrosperma]1.85e-1075.68Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AALV ALA+D  EFYG CDP + +LCLYGHPNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

XP_022948759.1 PHD finger protein ALFIN-LIKE 1-like [Cucurbita moschata]5.34e-1178.38Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AALV ALA+D  EFYG CDPG+ +LCLYGHPNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

XP_023539291.1 PHD finger protein ALFIN-LIKE 1-like [Cucurbita pepo subsp. pepo]5.37e-1075.68Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AALV ALA+D  EFYG CDP + +LCLYGHPNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

TrEMBL top hitse value%identityAlignment
A0A5A7THA3 PHD finger protein ALFIN-LIKE 1-like9.6e-1656.82Show/hide
Query:  SFPSLSALGSSALYRVSE-------NAIIQIFRLRPLAALVLALAYDAGEFYGPCDP--------------GEGSLCLYGHPNETWEV
        SFP    +  +A++ + E       N + +IFRLRPLAALVLALAYDAGEFYGPCDP              GEGSLCLYGHPNETWEV
Subjt:  SFPSLSALGSSALYRVSE-------NAIIQIFRLRPLAALVLALAYDAGEFYGPCDP--------------GEGSLCLYGHPNETWEV

A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-944.9e-2859.66Show/hide
Query:  MSTFFISFQILGPFCCRGCFCLLTLSTSFPSLSA------LGSS-------------ALYRVSENAII------QIFRLRPLAALVLALAYDAGEFYGPC
        MS+F+ISFQ LGPFCCRGCFCLL+ S SFPSLSA      +G S             ++YR + + ++      + FRL PLAALVLALAYD GEFY PC
Subjt:  MSTFFISFQILGPFCCRGCFCLLTLSTSFPSLSA------LGSS-------------ALYRVSENAII------QIFRLRPLAALVLALAYDAGEFYGPC

Query:  DPGEGSLCLYGHPNETWEV
        DPGE SLCLYGHPNETWEV
Subjt:  DPGEGSLCLYGHPNETWEV

A0A6J1GAV7 PHD finger protein ALFIN-LIKE 1-like2.5e-0878.38Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AALV ALA+D  EFYG CDPG+ +LCLYGHPNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

A0A6J1IZY1 PHD finger protein ALFIN-LIKE 1-like1.6e-0775.68Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AALV ALA+D  EFYG CDP + +LCLYGHPNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

E5GBF1 Phd/F-box containing protein1.6e-0775.68Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AALV ALA+D  EFYG CDP + +LCLYGHPNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

SwissProt top hitse value%identityAlignment
B8ADZ3 PHD finger protein ALFIN-LIKE 73.9e-0644.78Show/hide
Query:  SALGSSALYRVSENA-----IIQIFRLRPLAALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        +A G++A   V  NA     + + FR R  A +V AL  D  +FY  CDP + +LCLYG PNETW+V
Subjt:  SALGSSALYRVSENA-----IIQIFRLRPLAALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

B8B8I3 PHD finger protein ALFIN-LIKE 24.6e-0764.86Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        A LV AL  D  EFYG CDP + +LCLYGHPN  WEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

Q6Z7F4 PHD finger protein ALFIN-LIKE 73.9e-0644.78Show/hide
Query:  SALGSSALYRVSENA-----IIQIFRLRPLAALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        +A G++A   V  NA     + + FR R  A +V AL  D  +FY  CDP + +LCLYG PNETW+V
Subjt:  SALGSSALYRVSENA-----IIQIFRLRPLAALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

Q8H383 PHD finger protein ALFIN-LIKE 24.6e-0764.86Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        A LV AL  D  EFYG CDP + +LCLYGHPN  WEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

Q9SRM4 PHD finger protein ALFIN-LIKE 22.1e-0762.16Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AAL+ AL  D  +FY  CDP + +LCLYGHPNE+WEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

Arabidopsis top hitse value%identityAlignment
AT1G14510.1 alfin-like 73.6e-0759.46Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        A L+ AL+ D  +FY  CDP + +LCLYG PNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

AT2G02470.1 alfin-like 68.0e-0759.46Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        A L+ AL  D  +FY  CDP + +LCLYG PNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

AT2G02470.2 alfin-like 68.0e-0759.46Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        A L+ AL  D  +FY  CDP + +LCLYG PNETWEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

AT3G11200.1 alfin-like 21.5e-0862.16Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        AAL+ AL  D  +FY  CDP + +LCLYGHPNE+WEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV

AT5G26210.1 alfin-like 44.7e-0756.76Show/hide
Query:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV
        A ++ AL  D  EF+  CDP + +LCLYGHPNE WEV
Subjt:  AALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTACCTTCTTCATCTCATTCCAAATCCTTGGACCATTCTGTTGCCGAGGCTGCTTCTGCCTATTAACATTATCCACTTCGTTTCCTTCCCTTTCTGCTTTGGGTTC
TTCTGCTCTCTATAGGGTTTCCGAGAATGCTATAATTCAGATTTTCAGATTACGCCCGCTTGCCGCTCTTGTTCTCGCCCTCGCTTACGATGCCGGTGAATTCTACGGTC
CTTGTGATCCAGGTGAGGGAAGTTTGTGTCTGTATGGACATCCTAATGAAACATGGGAAGTGAGATGGCATGAACAGAAAAGGATTGGCTATCTCTTGTTGCTGTACATA
GTGATTCCTGGTTGCTCTACGTGGCTTTCTATTTTGGAGCAAGGCTTGACTGAAACAAAAGGTAAAACCGTTCCACTTTTGAATTTTTGCTCGCAGGCTTTAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTACCTTCTTCATCTCATTCCAAATCCTTGGACCATTCTGTTGCCGAGGCTGCTTCTGCCTATTAACATTATCCACTTCGTTTCCTTCCCTTTCTGCTTTGGGTTC
TTCTGCTCTCTATAGGGTTTCCGAGAATGCTATAATTCAGATTTTCAGATTACGCCCGCTTGCCGCTCTTGTTCTCGCCCTCGCTTACGATGCCGGTGAATTCTACGGTC
CTTGTGATCCAGGTGAGGGAAGTTTGTGTCTGTATGGACATCCTAATGAAACATGGGAAGTGAGATGGCATGAACAGAAAAGGATTGGCTATCTCTTGTTGCTGTACATA
GTGATTCCTGGTTGCTCTACGTGGCTTTCTATTTTGGAGCAAGGCTTGACTGAAACAAAAGGTAAAACCGTTCCACTTTTGAATTTTTGCTCGCAGGCTTTAAGTTAG
Protein sequenceShow/hide protein sequence
MSTFFISFQILGPFCCRGCFCLLTLSTSFPSLSALGSSALYRVSENAIIQIFRLRPLAALVLALAYDAGEFYGPCDPGEGSLCLYGHPNETWEVRWHEQKRIGYLLLLYI
VIPGCSTWLSILEQGLTETKGKTVPLLNFCSQALS