CuGenDBv2

Gene ID	IVF0017355
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr03:5866471..5866896
RNA-Seq Expression	IVF0017355
Synteny	IVF0017355
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033744.1 retrotransposon protein [Cucumis melo var. makuwa]

6.81e-91

98.58

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Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0053857.1 retrotransposon protein [Cucumis melo var. makuwa]

6.29e-92

96.45

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Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFELEAIH+ALDQTNEQLREIA+WPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

KAA0065692.1 retrotransposon protein [Cucumis melo var. makuwa]

3.01e-92

98.58

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Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

3.78e-91

97.87

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Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR+IAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TYK21395.1 retrotransposon protein [Cucumis melo var. makuwa]

1.94e-90

97.87

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Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR+IAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRU1 Retrotransposon protein

6.6e-70

97.87

Show/hide

Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR+IAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7TRV1 Retrotransposon protein

2.9e-70

98.58

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Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5A7VBM4 Retrotransposon protein

2.9e-70

98.58

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Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3CHA0 Retrotransposon protein

6.6e-70

97.87

Show/hide

Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR+IAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

A0A5D3DCZ1 Retrotransposon protein

6.6e-70

97.87

Show/hide

Query:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS
        MGDGNEDFPPVYSQGV+ISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLR+IAEWPARNLANDNHVRTEFF ILREMPELTS
Subjt:  MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
        LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTAACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGG
ATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGGAGATTGCGGAGTGGC
CAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCACATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTT
TTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

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Protein sequence

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MGDGNEDFPPVYSQGVNISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFHILREMPELTSLDRALLQRHL
LSRMDDLRGFVLMPEDEREGFCRVLLRDIER

IVF0017355 (gene) of Melon (IVF77) v1 genome