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IVF0017362 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017362
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranscription termination factor MTERF6
Genome locationchr11:14073284..14074051
RNA-Seq ExpressionIVF0017362
SyntenyIVF0017362
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0032502 - developmental process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047800.1 transcription termination factor MTERF6 [Cucumis melo var. makuwa]1.58e-5985.47Show/hide
Query:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF
        VLGKMILLNPRLI YNIVPKLTEIVDFRA FGLDKQGLIGKVLVKYPYL GYNFDKMLR          LTDIGLQAIAVGY EVLCRDANKVLRLNFDF
Subjt:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF

Query:  LKNCGFLDAQIITLSWG
        LKNCGFL+AQIITL  G
Subjt:  LKNCGFLDAQIITLSWG

KAE8646817.1 hypothetical protein Csa_005087 [Cucumis sativus]1.16e-7263.68Show/hide
Query:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG
        MVECLATLGS  HE ASA+AQ PYMLFH MEDKLCPRL          K+LGKMILLNPRLI Y+IVPKLTEIVDF A+FGLDKQGLI KVLVKYP+L G
Subjt:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG

Query:  YNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG--------------------VELKKFLVIQTSFN
        Y+ DK LR          L D+ LQAIA GY EVLCRDANKVL  NFDFLKNCGF DAQI+ L  G                    +ELKK LVI+TSF+
Subjt:  YNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG--------------------VELKKFLVIQTSFN

Query:  M
        M
Subjt:  M

TYK01057.1 transcription termination factor MTERF6 [Cucumis melo var. makuwa]1.76e-6389.74Show/hide
Query:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF
        VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR          LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF
Subjt:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF

Query:  LKNCGFLDAQIITLSWG
        LKNCGFLDAQIITL  G
Subjt:  LKNCGFLDAQIITLSWG

XP_008448401.1 PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucumis melo]5.67e-6189.38Show/hide
Query:  MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNC
        MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR          LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNC

Query:  GFLDAQIITLSWG
        GFLDAQIITL  G
Subjt:  GFLDAQIITLSWG

XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]1.21e-6754.47Show/hide
Query:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG
        MVECLATLGS  HE ASA+AQ PYMLFH MEDKLCPRL          K+LGKMILLNPRLI Y+IVPKLTEIVDF A+FGLDKQGLI KVLVKYP+L G
Subjt:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG

Query:  YNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG----------------------------------
        Y+ DK LR          L D+ LQAIA GY EVLCRDANKVL  NFDFLKNCGF DAQI+ L  G                                  
Subjt:  YNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG----------------------------------

Query:  ------VELKKFLVIQTSF----------NMKKFSMKFGMLGCHST
              +EL+  ++ Q +           N KKF MKFGML CHST
Subjt:  ------VELKKFLVIQTSF----------NMKKFSMKFGMLGCHST

TrEMBL top hitse value%identityAlignment
A0A0A0KE07 Uncharacterized protein1.8e-6465.28Show/hide
Query:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG
        MVECLATLGS  HE ASA+AQ PYMLFH MEDKLCPRL          K+LGKMILLNPRLI Y+IVPKLTEIVDF A+FGLDKQGLI KVLVKYP+L G
Subjt:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG

Query:  YNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG--------------------VELKKFLVIQTSFN
        Y+ DK LR          L D+ LQAIA GY EVLCRDANKVL  NFDFLKNCGF DAQI+ L  G                    +ELKK LVI+TSF+
Subjt:  YNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG--------------------VELKKFLVIQTSFN

Query:  MKKFSMKFGMLGCHST
        MKKF MKFGML CHST
Subjt:  MKKFSMKFGMLGCHST

A0A1S3BK85 transcription termination factor MTERF6, chloroplastic/mitochondrial-like1.7e-4689.38Show/hide
Query:  MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNC
        MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR          LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNC
Subjt:  MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNC

Query:  GFLDAQIITLSWG
        GFLDAQIITL  G
Subjt:  GFLDAQIITLSWG

A0A2P5BHX3 Mitochodrial transcription termination factor6.9e-4056.36Show/hide
Query:  VECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGY
        VECL TLG+K  EVASAIA+ P++L H +E+KLCP L          K LGKMILLNPRLISY+I  KLTEIVDF AS GL + G+IGKVLVK P++ GY
Subjt:  VECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRL----------KVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGY

Query:  NFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG
        + DK LR          +T+ G+Q++A+ Y +VLCRD NK+LR NF +L++CGF D QI TL  G
Subjt:  NFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG

A0A5A7TX97 Transcription termination factor MTERF61.1e-4585.47Show/hide
Query:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF
        VLGKMILLNPRLI YNIVPKLTEIVDFRA FGLDKQGLIGKVLVKYPYL GYNFDKMLR          LTDIGLQAIAVGY EVLCRDANKVLRLNFDF
Subjt:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF

Query:  LKNCGFLDAQIITLSWG
        LKNCGFL+AQIITL  G
Subjt:  LKNCGFLDAQIITLSWG

A0A5D3BP20 Transcription termination factor MTERF61.1e-4889.74Show/hide
Query:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF
        VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR          LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF
Subjt:  VLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLR----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDF

Query:  LKNCGFLDAQIITLSWG
        LKNCGFLDAQIITL  G
Subjt:  LKNCGFLDAQIITLSWG

SwissProt top hitse value%identityAlignment
Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial4.8e-3850.3Show/hide
Query:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG
        MVECL++LG    EVASAI + P +L H +E+KLCP L            LGKMIL NPRLISY+I  KLT IV F AS GLD+ G+IGKVLVK P+L G
Subjt:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG

Query:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG
        Y+ DK LR           L++ G++++ + + ++LCRD NK+L+ N+D+LK CGF D+QI T+  G
Subjt:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG

Arabidopsis top hitse value%identityAlignment
AT4G38160.1 Mitochondrial transcription termination factor family protein3.4e-3950.3Show/hide
Query:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG
        MVECL++LG    EVASAI + P +L H +E+KLCP L            LGKMIL NPRLISY+I  KLT IV F AS GLD+ G+IGKVLVK P+L G
Subjt:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG

Query:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG
        Y+ DK LR           L++ G++++ + + ++LCRD NK+L+ N+D+LK CGF D+QI T+  G
Subjt:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG

AT4G38160.2 Mitochondrial transcription termination factor family protein3.4e-3950.3Show/hide
Query:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG
        MVECL++LG    EVASAI + P +L H +E+KLCP L            LGKMIL NPRLISY+I  KLT IV F AS GLD+ G+IGKVLVK P+L G
Subjt:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG

Query:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG
        Y+ DK LR           L++ G++++ + + ++LCRD NK+L+ N+D+LK CGF D+QI T+  G
Subjt:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG

AT4G38160.3 Mitochondrial transcription termination factor family protein3.4e-3950.3Show/hide
Query:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG
        MVECL++LG    EVASAI + P +L H +E+KLCP L            LGKMIL NPRLISY+I  KLT IV F AS GLD+ G+IGKVLVK P+L G
Subjt:  MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKV----------LGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTG

Query:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG
        Y+ DK LR           L++ G++++ + + ++LCRD NK+L+ N+D+LK CGF D+QI T+  G
Subjt:  YNFDKMLR-----------LTDIGLQAIAVGYSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAGTGCCTTGCAACTCTGGGTAGTAAGTCCCATGAAGTTGCTTCAGCCATTGCCCAACTTCCTTACATGCTTTTTCATATCATGGAGGACAAGCTTTGCCCACG
TTTGAAGGTGCTTGGGAAGATGATTTTGCTTAATCCTAGGCTTATTAGCTACAACATTGTGCCGAAACTTACTGAGATTGTGGACTTTCGTGCTAGTTTTGGCCTTGATA
AGCAAGGGTTGATTGGCAAAGTTTTGGTAAAATATCCATATCTTACGGGGTATAATTTCGACAAAATGTTACGTTTGACGGATATAGGTCTTCAAGCAATTGCAGTTGGC
TATTCTGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGAGACTCAATTTTGATTTCTTGAAGAACTGTGGATTTCTAGATGCGCAAATTATAACTTTGTCATGGGGAGT
AGAATTGAAGAAGTTTCTGGTCATCCAGACTTCTTTCAATATGAAGAAGTTTTCAATGAAGTTTGGTATGTTAGGTTGTCATTCTACTAAAGGGAAAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAGTGCCTTGCAACTCTGGGTAGTAAGTCCCATGAAGTTGCTTCAGCCATTGCCCAACTTCCTTACATGCTTTTTCATATCATGGAGGACAAGCTTTGCCCACG
TTTGAAGGTGCTTGGGAAGATGATTTTGCTTAATCCTAGGCTTATTAGCTACAACATTGTGCCGAAACTTACTGAGATTGTGGACTTTCGTGCTAGTTTTGGCCTTGATA
AGCAAGGGTTGATTGGCAAAGTTTTGGTAAAATATCCATATCTTACGGGGTATAATTTCGACAAAATGTTACGTTTGACGGATATAGGTCTTCAAGCAATTGCAGTTGGC
TATTCTGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGAGACTCAATTTTGATTTCTTGAAGAACTGTGGATTTCTAGATGCGCAAATTATAACTTTGTCATGGGGAGT
AGAATTGAAGAAGTTTCTGGTCATCCAGACTTCTTTCAATATGAAGAAGTTTTCAATGAAGTTTGGTATGTTAGGTTGTCATTCTACTAAAGGGAAAGCATAA
Protein sequenceShow/hide protein sequence
MVECLATLGSKSHEVASAIAQLPYMLFHIMEDKLCPRLKVLGKMILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLRLTDIGLQAIAVG
YSEVLCRDANKVLRLNFDFLKNCGFLDAQIITLSWGVELKKFLVIQTSFNMKKFSMKFGMLGCHSTKGKA