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IVF0017448 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017448
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:6095005..6095246
RNA-Seq ExpressionIVF0017448
SyntenyIVF0017448
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031938.1 retrotransposon protein [Cucumis melo var. makuwa]1.41e-09100Show/hide
Query:  MSLDKVMETRVARASDGRHVSSGSKQKW
        MSLDKVMETRVARASDGRHVSSGSKQKW
Subjt:  MSLDKVMETRVARASDGRHVSSGSKQKW
KAA0051827.1 retrotransposon protein [Cucumis melo var. makuwa]1.17e-0473.53Show/hide
Query:  TTMNNLIALLTRPSYNIKMQAQHDKRLSDSYRSS
        TTMNNL ALL   SYN+K QAQH KR SDSYR S
Subjt:  TTMNNLIALLTRPSYNIKMQAQHDKRLSDSYRSS
KAA0066105.1 retrotransposon protein [Cucumis melo var. makuwa]4.92e-1054.43Show/hide
Query:  MSLDKVMETRVARASDGRHVSSGSKQK--------WEAVCR--HTTMNNLIALLTRPSYNIKMQAQHDKRLSDSYRSSS
        MS D+VM T+ ARASDGR+VSS SK+K         + +C      +NNL  LLT PSYN K QAQ  KR  DSYRSSS
Subjt:  MSLDKVMETRVARASDGRHVSSGSKQK--------WEAVCR--HTTMNNLIALLTRPSYNIKMQAQHDKRLSDSYRSSS
TYK16759.1 retrotransposon protein [Cucumis melo var. makuwa]1.75e-09100Show/hide
Query:  MSLDKVMETRVARASDGRHVSSGSKQKW
        MSLDKVMETRVARASDGRHVSSGSKQKW
Subjt:  MSLDKVMETRVARASDGRHVSSGSKQKW
TrEMBL top hitse value%identityAlignment
A0A5A7SMS4 Retrotransposon protein9.7e-06100Show/hide
Query:  MSLDKVMETRVARASDGRHVSSGSKQKW
        MSLDKVMETRVARASDGRHVSSGSKQKW
Subjt:  MSLDKVMETRVARASDGRHVSSGSKQKW
A0A5D3CW35 Retrotransposon protein3.3e-0653.75Show/hide
Query:  MSLDKVMETRVARASDGRHVSSGSKQK--------WEAVC--RHTTMNNLIALLTRPSYNIKMQAQHDKRLSDSYRSSSS
        MS D+VM T+ ARASDGR+VSS SK+K         + +C      +NNL  LLT PSYN K QAQ  KR  DSYRSSS+
Subjt:  MSLDKVMETRVARASDGRHVSSGSKQK--------WEAVC--RHTTMNNLIALLTRPSYNIKMQAQHDKRLSDSYRSSSS
A0A5D3D2K5 Retrotransposon protein9.7e-06100Show/hide
Query:  MSLDKVMETRVARASDGRHVSSGSKQKW
        MSLDKVMETRVARASDGRHVSSGSKQKW
Subjt:  MSLDKVMETRVARASDGRHVSSGSKQKW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTTGACAAAGTAATGGAAACAAGAGTCGCTCGGGCAAGTGATGGTAGGCATGTTTCTAGTGGGTCTAAGCAAAAATGGGAGGCCGTTTGTAGACATACGACAAT
GAACAACTTAATCGCATTACTGACTCGCCCGTCTTACAACATCAAGATGCAAGCACAACACGACAAGAGGTTGTCTGACAGTTATAGGTCATCCTCGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTTGACAAAGTAATGGAAACAAGAGTCGCTCGGGCAAGTGATGGTAGGCATGTTTCTAGTGGGTCTAAGCAAAAATGGGAGGCCGTTTGTAGACATACGACAAT
GAACAACTTAATCGCATTACTGACTCGCCCGTCTTACAACATCAAGATGCAAGCACAACACGACAAGAGGTTGTCTGACAGTTATAGGTCATCCTCGAGCTGA
Protein sequenceShow/hide protein sequence
MSLDKVMETRVARASDGRHVSSGSKQKWEAVCRHTTMNNLIALLTRPSYNIKMQAQHDKRLSDSYRSSSS