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IVF0017468 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017468
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:19266876..19267049
RNA-Seq ExpressionIVF0017468
SyntenyIVF0017468
Gene Ontology termsGO:0090481 - pyrimidine nucleotide-sugar transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015165 - pyrimidine nucleotide-sugar transmembrane transporter activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]1.57e-1680.85Show/hide
Query:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGV
        +WVSSPWVS  +KKGRGDEKNG KVGVF+MRRS FVR GILKKE GV
Subjt:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGV
KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]6.22e-2185.71Show/hide
Query:  VSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKEREGF
        VSV KKKGRGDEKNG KVGVFVM RSSFVR G+LKK+ GVWVKKEREGF
Subjt:  VSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKEREGF
KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]2.15e-0876.47Show/hide
Query:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSS
        +WVSSPWVSV +KKGRGDEKNG KV VFV+  SS
Subjt:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSS
KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.97e-2496Show/hide
Query:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWV
        MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGV +
Subjt:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWV
TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.13e-2794.44Show/hide
Query:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKER
        MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVW  KE+
Subjt:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKER
TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein8.7e-1380.85Show/hide
Query:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGV
        +WVSSPWVS  +KKGRGDEKNG KVGVF+MRRS FVR GILKKE GV
Subjt:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGV
A0A5A7TTV0 Transcription factor bHLH36-like1.6e-1485.71Show/hide
Query:  VSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKEREGF
        VSV KKKGRGDEKNG KVGVFVM RSSFVR G+LKK+ GVWVKKEREGF
Subjt:  VSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKEREGF
A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X23.0e-0576.47Show/hide
Query:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSS
        +WVSSPWVSV +KKGRGDEKNG KV VFV+  SS
Subjt:  LWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSS
A0A5A7UFR0 Ty3-gypsy retrotransposon protein3.1e-1894.12Show/hide
Query:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVK
        MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGV ++
Subjt:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVK
A0A5D3BCV7 Ty3-gypsy retrotransposon protein3.3e-2094.44Show/hide
Query:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKER
        MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVW  KE+
Subjt:  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKER
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGGGTCTCCTCGCCATGGGTCTCTGTCATCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGCTAAGGTTGGGGTTTTTGTCATGCGTCGTTCGTCGTTCGT
GAGGGAAGGGATTTTGAAGAAGGAAACGGGAGTGTGGGTGAAGAAGGAAAGGGAGGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATGGGTCTCCTCGCCATGGGTCTCTGTCATCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGCTAAGGTTGGGGTTTTTGTCATGCGTCGTTCGTCGTTCGT
GAGGGAAGGGATTTTGAAGAAGGAAACGGGAGTGTGGGTGAAGAAGGAAAGGGAGGGATTTTGA
Protein sequenceShow/hide protein sequence
MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVWVKKEREGF