CuGenDBv2

Gene ID	IVF0017486
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr10:18095020..18095301
RNA-Seq Expression	IVF0017486
Synteny	IVF0017486
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

4.70e-52

98.92

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

KAA0038956.1 copia protein [Cucumis melo var. makuwa]

4.91e-53

97.85

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.26e-55

98.92

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.14e-52

98.92

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]

2.50e-54

96.77

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDA+LNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT1 Putative copia-type polyprotein

2.4e-44

98.92

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

A0A5A7TA92 Copia protein

1.2e-43

97.85

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-44

98.92

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-44

98.92

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-44

98.92

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

1.6e-24

53.26

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Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTA
        MA+NN VPFQVP LTK NY +W +RMKA+LG+ DVW+IV  G+ EPE++ +L+Q Q++ L+++RK+D+KAL +I+Q +D++ F K+  AT+A
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTA

Sequences

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CDS sequence

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ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGA
CATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTAAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCACCATCA
TTCATCAAGCCATTGATGATAACAATTTTATGAAAATTTCTGGAGCAACTACTGCATATTAA

mRNA sequence

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Protein sequence

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MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

IVF0017486 (gene) of Melon (IVF77) v1 genome