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IVF0017570 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017570
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr10:7755949..7756308
RNA-Seq ExpressionIVF0017570
SyntenyIVF0017570
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142327.1 uncharacterized protein LOC111012468 [Momordica charantia]2.11e-4061.82Show/hide
Query:  SSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSKEIFAS
        SSS+T+     S +E YSNPY+LHHS+  S+VLVS+LL E NYTSWS++M I LTVKNK+GF+D SI+RP+G  + SW +CN+VV  W+LNSLSKEI AS
Subjt:  SSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSKEIFAS

Query:  VNFSDSTHEI
        V FSDS  +I
Subjt:  VNFSDSTHEI

XP_038874906.1 uncharacterized protein LOC120067409 [Benincasa hispida]6.16e-4060.87Show/hide
Query:  SSSSTNQTMNF-----STIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSK
        SS S+NQ   +     S ++QYS  YFLHHS++ S+VLVS+LLT++NY+SWSQ+M +  TVKNK+GFID ++ +P G+L  SWI+CNSVVTTWI N+LSK
Subjt:  SSSSTNQTMNF-----STIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSK

Query:  EIFASVNFSDSTHEI
        +I ASVNFSDST EI
Subjt:  EIFASVNFSDSTHEI

XP_038875043.1 uncharacterized protein LOC120067569 [Benincasa hispida]7.80e-4163.25Show/hide
Query:  PTSSSSTNQTMNF-----STIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSL
        PTS  ++N   N      S +EQY NPYFLH  ++ S+V +SNLLTE+NY SWSQAMKI LTVKNKLGFI+  I  P+GELL SWI+CN VVT WILNSL
Subjt:  PTSSSSTNQTMNF-----STIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSL

Query:  SKEIFASVNFSDSTHEI
        SKEI  S+NFS+S  EI
Subjt:  SKEIFASVNFSDSTHEI

XP_038887186.1 uncharacterized protein LOC120077373 [Benincasa hispida]6.42e-4870.09Show/hide
Query:  PTSSSSTNQTMNF-----STIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSL
        PTSS ++N   N      S +EQY NPYFLH S++ S+VLVSNLLTE+NY SWSQAMKIGLTVKNKLGFI+  I RP+GELL SWI+ N +VTTWILNSL
Subjt:  PTSSSSTNQTMNF-----STIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSL

Query:  SKEIFASVNFSDSTHEI
        SKEIFAS+NFSDS  EI
Subjt:  SKEIFASVNFSDSTHEI

XP_038902375.1 uncharacterized protein LOC120089012 [Benincasa hispida]1.87e-4360.33Show/hide
Query:  PIVPPTSSS-----STNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWI
        P +P TSS+       + ++N + +EQY+N YFLHHS++ ++V+VSNLLTETNYTSWSQ M IGL VKNKLGF+D SI R TG+LL SWI+C+ VVT WI
Subjt:  PIVPPTSSS-----STNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWI

Query:  LNSLSKEIFASVNFSDSTHEI
        LNSL KEI  S+NF+DS  +I
Subjt:  LNSLSKEIFASVNFSDSTHEI

TrEMBL top hitse value%identityAlignment
A0A0A0LI19 Retrotran_gag_3 domain-containing protein2.1e-2468.42Show/hide
Query:  MAEPIVPPTSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVT
        MA+P + P SSSS NQT NFSTIEQYSNPYFLHHS   SIVLVSNLLTETNY SWSQAMKI L  KNKLGF D SITRP     ++W+  +  +T
Subjt:  MAEPIVPPTSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVT

A0A6J1CMF8 uncharacterized protein LOC1110124681.6e-2961.26Show/hide
Query:  TSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSKEIFA
        +SSS+T+     S +E YSNPY+LHHS+  S+VLVS+LL E NYTSWS++M I LTVKNK+GF+D SI+RP+G  + SW +CN+VV  W+LNSLSKEI A
Subjt:  TSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSKEIFA

Query:  SVNFSDSTHEI
        SV FSDS  +I
Subjt:  SVNFSDSTHEI

A0A6J1DIP8 uncharacterized protein LOC1110203991.3e-3163.03Show/hide
Query:  MAEPIVPPTSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILN
        MA+  +  T+S+ST   +    IEQY+NPYFLHHS+  S+VLVS+ LT  NYTSWS++M I LTVKNK+GF+D SI RPTG+LL SWI+CN+VV +WILN
Subjt:  MAEPIVPPTSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILN

Query:  SLSKEIFASVNFSDSTHEI
        SLSKEI AS+ FSDS  EI
Subjt:  SLSKEIFASVNFSDSTHEI

A0A6J1DKR8 uncharacterized protein LOC1110218311.6e-2453.39Show/hide
Query:  EPIVPP-TSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNS
        +PI P    SSS N + + S ++   NPY+LHH++   +VLV+  LTE NY+SWS++M I L++KNKLGFID SI+RP GELL +WI  N VV  WILNS
Subjt:  EPIVPP-TSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNS

Query:  LSKEIFASVNFSDSTHEI
        +SKEI +S+ FS+S  +I
Subjt:  LSKEIFASVNFSDSTHEI

A0A6J1DNP7 uncharacterized protein LOC1110220659.6e-3065.69Show/hide
Query:  MNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSKEIFASVNFSDSTH
        MN   +EQ++NPYFLHHS+  S+VLVS+LLT+ NYTSWS+++ I LTVKNK+GF+D SI+RPT   L SWI+CN+VV +WI NSLSK+I ASV FSDS H
Subjt:  MNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSKEIFASVNFSDSTH

Query:  EI
        EI
Subjt:  EI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2.4e-0932.65Show/hide
Query:  NPYFL----HHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPT--GELLQSWILCNSVVTTWILNSLSKEIFASVNFSDSTHEI
        +PY+L    HH    SI  +S    E NY +W    +  L V  K GFID ++ +P     L Q W  CN++V  W++NS++ ++  SV ++++ H++
Subjt:  NPYFL----HHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPT--GELLQSWILCNSVVTTWILNSLSKEIFASVNFSDSTHEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAACCCATCGTACCGCCAACTTCCTCCTCATCCACCAACCAAACGATGAATTTCTCCACCATTGAGCAATATTCCAATCCCTACTTCCTACACCATTCAGAGAC
CATGAGCATCGTCCTCGTATCCAACCTCCTCACCGAAACGAACTACACCTCCTGGAGCCAAGCAATGAAAATCGGTTTAACCGTGAAGAACAAACTCGGTTTCATCGATT
ACAGCATCACACGTCCTACCGGTGAACTCCTCCAATCATGGATTCTCTGTAACAGTGTAGTCACGACTTGGATATTAAATTCACTATCAAAAGAAATTTTTGCCAGCGTC
AATTTCTCTGATTCAACACACGAAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAACCCATCGTACCGCCAACTTCCTCCTCATCCACCAACCAAACGATGAATTTCTCCACCATTGAGCAATATTCCAATCCCTACTTCCTACACCATTCAGAGAC
CATGAGCATCGTCCTCGTATCCAACCTCCTCACCGAAACGAACTACACCTCCTGGAGCCAAGCAATGAAAATCGGTTTAACCGTGAAGAACAAACTCGGTTTCATCGATT
ACAGCATCACACGTCCTACCGGTGAACTCCTCCAATCATGGATTCTCTGTAACAGTGTAGTCACGACTTGGATATTAAATTCACTATCAAAAGAAATTTTTGCCAGCGTC
AATTTCTCTGATTCAACACACGAAATATAA
Protein sequenceShow/hide protein sequence
MAEPIVPPTSSSSTNQTMNFSTIEQYSNPYFLHHSETMSIVLVSNLLTETNYTSWSQAMKIGLTVKNKLGFIDYSITRPTGELLQSWILCNSVVTTWILNSLSKEIFASV
NFSDSTHEI