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IVF0017715 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017715
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr05:17717403..17717834
RNA-Seq ExpressionIVF0017715
SyntenyIVF0017715
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047720.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]7.05e-98100Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
        GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR

KYP46923.1 Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan]4.60e-5357.34Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        +A+F+D +E+ +E+FM DF VFG  F ECL NLE VL+ C ET L+LNWEKC+FMVTEGI+LG+KISH G+EVDP K++V+ KLPP  ++K ++SFL HV
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
        GFYRRFIK F  I + L NLL     + F++ C +A++ LKAR
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR

WP_217833188.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.81e-5258.16Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        MA+F+D+LE+ VE+FM DF VFG  + ECL NLE VLK C++T LVLNWEKC+FMVTEGI+LG+KIS  GLEVD  +ID ++KLP  +++K L+SFL H 
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK
        GFYRRFIKGF Q+ K L  LL A++   F+ KC   +++L+
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK

XP_038885905.1 uncharacterized mitochondrial protein AtMg00860-like [Benincasa hispida]5.20e-5663.12Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        MA+F+DFLE++VE+FM DF VFGD F  CL+NL+ VL   +ET LVLNWEKC+FMVTEGI+LG+KIS AGLEVD  KIDV+ KLPPS+++K L+SFL HV
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK
         FYR+F+KGF QI + L  LL A+  Y+F+E C  A++TLK
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK

XP_038894606.1 uncharacterized mitochondrial protein AtMg00860-like [Benincasa hispida]6.48e-5963.83Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        MA+F+DFLE+ VE+FM DF VFGD F  CL+NLE +L  C+ET LVLNW+KC+FM+TEGI+LG+K+S AGLEVD  KIDV++KLPPSS++KAL+SFL HV
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK
        GFYRRF+KGF QI + L  LL A++ Y F+E C   ++TLK
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK

TrEMBL top hitse value%identityAlignment
A0A151RWI8 Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment)2.6e-4257.34Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        +A+F+D +E+ +E+FM DF VFG  F ECL NLE VL+ C ET L+LNWEKC+FMVTEGI+LG+KISH G+EVDP K++V+ KLPP  ++K ++SFL HV
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
        GFYRRFIK F  I + L NLL     + F++ C +A++ LKAR
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR

A0A5D3CAY9 Retrovirus-related Pol polyprotein from transposon 17.64.0e-75100Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
        GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR

A0A6P5NKQ9 uncharacterized protein LOC1102804492.0e-4258.74Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        +++F+D +E+ +E+FM DF VFGD FT CLN+L  VLK C+ET LVLNWEKC+FMVT GI+LG+KIS+ G+EVD  K++++ KLPP SD+KA++SFL H 
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
        GFYRRFIK F +I K L NLL +   +IFDE C  A++ LK R
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR

A0A6P6GDJ4 Reverse transcriptase4.5e-4257.34Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        M++F+D +E ++EIFM DF VFGD FT CL NL  VL  CKET LVLNWEKC+FMV EGI+LG+K+S  G+EVD  KI+V+ KLPP + +K ++SFL H 
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
        GFYRRFIK F +I K LCNLL     ++FD++C  A+  LK +
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR

A0A6P6GGJ1 LOW QUALITY PROTEIN: uncharacterized protein LOC1124928761.0e-4156.64Show/hide
Query:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV
        M++F++ +E ++EIFM DF VFGD FT CL NL  +L  CKET LVLNWEKC+FMV EGI+LG+K+S +G+EVD  KI+V+ KLPP + +K ++SFL HV
Subjt:  MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHV

Query:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR
        GFYRRFIK F +I K LCNLL     ++FD++C  A+  LK +
Subjt:  GFYRRFIKGFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.2e-0728.57Show/hide
Query:  ERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIK
        E  V  +M D L+     +E + ++++VL+  K   L++N  KC F  ++   +GY IS  G       ID V +     + K L+ FL  V + R+FI 
Subjt:  ERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIK

Query:  GFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK
           Q+   L NLL     + +     QA + +K
Subjt:  GFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK

P0CT41 Transposon Tf2-12 polyprotein1.2e-0728.57Show/hide
Query:  ERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIK
        E  V  +M D L+     +E + ++++VL+  K   L++N  KC F  ++   +GY IS  G       ID V +     + K L+ FL  V + R+FI 
Subjt:  ERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIK

Query:  GFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK
           Q+   L NLL     + +     QA + +K
Subjt:  GFFQIVKSLCNLLGASQSYIFDEKCHQAYQTLK

P10394 Retrovirus-related Pol polyprotein from transposon 4121.1e-1332.31Show/hide
Query:  IFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIKGFFQI
        ++M D +V G      L NL EV   C+E  L L+ EKC F + E   LG+K +  G+  D  K DV+   P   D  + + F+A   +YRRFIK F   
Subjt:  IFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIKGFFQI

Query:  VKSLCNLLGASQSYIFDEKCHQAYQTLKAR
         + +  L   +  + + ++C +A+  LK++
Subjt:  VKSLCNLLGASQSYIFDEKCHQAYQTLKAR

P92523 Uncharacterized mitochondrial protein AtMg008601.8e-0832.46Show/hide
Query:  LNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYK--ISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIKGFFQIVKSLCNLLGASQSY
        +N+L  VL+  ++ Q   N +KC F   +   LG++  IS  G+  DP K++ +   P   +   L+ FL   G+YRRF+K + +IV+ L  LL    S 
Subjt:  LNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYK--ISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIKGFFQIVKSLCNLLGASQSY

Query:  IFDEKCHQAYQTLK
         + E    A++ LK
Subjt:  IFDEKCHQAYQTLK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.5e-1428.48Show/hide
Query:  LFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGF
        +  + + ++  +++ D +VF + +     NL  VL +  +  L +N EK +F+ T+   LGY ++  G++ DP K+  +S++PP + +K L+ FL    +
Subjt:  LFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGF

Query:  YRRFIKGFFQIVKSLCNL-------LGASQS----YIFDEKCHQAYQTLKA
        YR+FI+ + ++ K L NL       + +SQS       DE   Q++  LK+
Subjt:  YRRFIKGFFQIVKSLCNL-------LGASQS----YIFDEKCHQAYQTLKA

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.3e-0932.46Show/hide
Query:  LNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYK--ISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIKGFFQIVKSLCNLLGASQSY
        +N+L  VL+  ++ Q   N +KC F   +   LG++  IS  G+  DP K++ +   P   +   L+ FL   G+YRRF+K + +IV+ L  LL    S 
Subjt:  LNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYK--ISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIKGFFQIVKSLCNLLGASQSY

Query:  IFDEKCHQAYQTLK
         + E    A++ LK
Subjt:  IFDEKCHQAYQTLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTGTTCGCGGACTTCCTAGAGAGATTAGTGGAAATTTTCATGGTTGATTTCTTAGTCTTTGGGGACTTTTTCACTGAATGTCTGAATAACTTAGAAGAAGTTTT
GAAGACATGCAAAGAGACACAACTCGTGCTTAATTGGGAGAAGTGTTACTTCATGGTAACTGAGGGAATTATGCTTGGGTACAAGATCTCCCATGCGGGATTAGAAGTCG
ATCCTACAAAGATTGATGTGGTTAGTAAATTGCCACCGTCTTCTGATTTAAAAGCATTGCAAAGCTTTTTGGCACATGTTGGATTTTATAGAAGATTCATTAAAGGATTT
TTCCAAATTGTCAAGTCACTGTGCAACTTATTGGGCGCTAGCCAATCCTACATCTTTGATGAGAAGTGCCACCAGGCGTACCAAACATTAAAAGCGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTGTTCGCGGACTTCCTAGAGAGATTAGTGGAAATTTTCATGGTTGATTTCTTAGTCTTTGGGGACTTTTTCACTGAATGTCTGAATAACTTAGAAGAAGTTTT
GAAGACATGCAAAGAGACACAACTCGTGCTTAATTGGGAGAAGTGTTACTTCATGGTAACTGAGGGAATTATGCTTGGGTACAAGATCTCCCATGCGGGATTAGAAGTCG
ATCCTACAAAGATTGATGTGGTTAGTAAATTGCCACCGTCTTCTGATTTAAAAGCATTGCAAAGCTTTTTGGCACATGTTGGATTTTATAGAAGATTCATTAAAGGATTT
TTCCAAATTGTCAAGTCACTGTGCAACTTATTGGGCGCTAGCCAATCCTACATCTTTGATGAGAAGTGCCACCAGGCGTACCAAACATTAAAAGCGCGTTGA
Protein sequenceShow/hide protein sequence
MALFADFLERLVEIFMVDFLVFGDFFTECLNNLEEVLKTCKETQLVLNWEKCYFMVTEGIMLGYKISHAGLEVDPTKIDVVSKLPPSSDLKALQSFLAHVGFYRRFIKGF
FQIVKSLCNLLGASQSYIFDEKCHQAYQTLKAR