; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0017718 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017718
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionYqgFc domain-containing protein
Genome locationchr09:21937669..21940643
RNA-Seq ExpressionIVF0017718
SyntenyIVF0017718
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042764.1 putative pre-16S rRNA nuclease isoform X2 [Cucumis melo var. makuwa]6.00e-10498.72Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ +
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY

XP_004143911.1 uncharacterized protein LOC101219574 [Cucumis sativus]1.88e-10287.57Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

XP_008437257.1 PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo]3.56e-11699.41Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

XP_008437258.1 PREDICTED: putative pre-16S rRNA nuclease isoform X2 [Cucumis melo]1.68e-10399.35Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ

XP_038875331.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]1.77e-9180.95Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKP  LFRDLLKR+ L+H RLLGLDVGDKYVGLAVSDPDNKIASPLSVL+RKK  M LMA+DF++LIS+FSLAGFIVGYP  RLR+N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE
        D+LCKTGKLE VKYTFWDE FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLDYFNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein1.9e-7987.57Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

A0A1S3ATK5 putative pre-16S rRNA nuclease isoform X24.9e-8099.35Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ

A0A1S3ATQ4 putative pre-16S rRNA nuclease isoform X16.8e-9099.41Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMA+DFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET

A0A5A7THE9 Putative pre-16S rRNA nuclease isoform X21.3e-8098.72Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY
        DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQ +
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGY

A0A6J1K3L4 uncharacterized protein LOC1114908571.8e-6979.17Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYV+P  LFRDLLK + L+  R LGLDVGDKYVGLAVSDPDNKIASPLSVL RKK  M LMA DFQ+LISE SL+GFIVGYPFD  R+N +A+QVKIFI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSE

SwissProt top hitse value%identityAlignment
A4XKC6 Putative pre-16S rRNA nuclease3.1e-1535.66Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVL-LRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLR--KNTEAIQVKIFIDDLC-KTGKLEGVKYTFWD
        R+L LD+G + +G+A+SDP    A P  VL L+K++    +     K+ +E  +   ++GYP  +    K TE +Q    ID++C +  +   V    WD
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVL-LRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLR--KNTEAIQVKIFIDDLC-KTGKLEGVKYTFWD

Query:  EGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN
        E F++K VE++++  N+     K ++DK AAV ILQGYLD+ N
Subjt:  EGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN

B6IN25 Putative pre-16S rRNA nuclease3.8e-1333.78Show/hide
Query:  LKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQ-VKIFIDDLCKTGKLEGV
        LK    ++ RL+GLD+G+K +GLAVSDP   +ASP+  + R K T D  A++  + + +  +   +VG P +         Q V+ F   L +  +L G 
Subjt:  LKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQ-VKIFIDDLCKTGKLEGV

Query:  --KYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD
          +  FWDE  ++  VE+M+   ++       ++DK AA  ILQG LD
Subjt:  --KYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD

B9MRK7 Putative pre-16S rRNA nuclease4.1e-1535.71Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASP-LSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF
        R+L LD+G+  VG+A+SDP    A P +++ LR K+  + + K FQ     +++   ++GYP  +L  + +  ++K   +   K G    V+   WDE F
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASP-LSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF

Query:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN
        ++K VE++I    L     K ++DK AAV ILQGYLD++N
Subjt:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFN

C4Z578 Putative pre-16S rRNA nuclease5.9e-1431.39Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNT-MDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF
        R++GLDVG K VG+A+SDP    A P   + RK+N  +       +++ISE+ +   +VGYP  +   +T   + K   +      +  G+  T WDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNT-MDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF

Query:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD
        T+   +++++   +     KT++D+ AAV IL+GY++
Subjt:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD

Q0AZP9 Putative pre-16S rRNA nuclease5.0e-1335.04Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFD-RLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF
        R++GLD+G+K +G+A SDP    A   S+L RK    DL     Q+L  EF +   ++G P +       +A++ + F   L +  K   +   FWDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFD-RLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGF

Query:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD
        +SK+ E+++   +L     K ++DK AAV ILQ YLD
Subjt:  TSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLD

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-5161.11Show/hide
Query:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI
        MKYVKP  L  + LK       R LGLDVGDKYVGLA+SDP N +ASPLSVLLRKK+ +DLMA DFQ L+  FS++G +VGYPF +L    + + V +FI
Subjt:  MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFI

Query:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNR
        ++L KT KL+ VKYT+WDE  +SK VE M+KPLNL P   KTMLDK AAV ILQ YLDY NR
Subjt:  DDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATGTGAAGCCGTCGATACTTTTTCGTGATTTGTTGAAGAGAGATGAACTTAAACATAGCCGTTTGCTTGGTTTGGATGTTGGTGATAAGTATGTTGGTTTAGC
CGTATCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGTGTTTTGTTAAGGAAGAAGAACACAATGGATTTGATGGCTAAGGATTTTCAGAAATTGATCTCTGAATTTT
CCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAAAAACACGGAAGCTATCCAAGTGAAAATCTTCATCGATGACCTTTGCAAAACTGGAAAACTTGAA
GGCGTAAAATATACTTTTTGGGATGAGGGCTTTACATCAAAGAATGTGGAACAAATGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATGCTGGACAAATT
TGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGAGCGAGACGTAG
mRNA sequenceShow/hide mRNA sequence
CTTCGAGCAGTTAATCGAACCGAGGGATCGGAAGGATTCGGGCTTCATCGAGTCTTGTGTCACATTCGATTGCGAATGAGTCTGATTGTGCAGCACCGATTGTCCGTTTT
GATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTTGAATTAAATAGAAATACAAGATGAAGTATGTGAAGCCGTCGATACTTTTTCGTGATTTGTTGAAGAGAGATGAAC
TTAAACATAGCCGTTTGCTTGGTTTGGATGTTGGTGATAAGTATGTTGGTTTAGCCGTATCTGACCCAGATAATAAAATCGCTTCCCCTCTTAGTGTTTTGTTAAGGAAG
AAGAACACAATGGATTTGATGGCTAAGGATTTTCAGAAATTGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAAAAACACGGA
AGCTATCCAAGTGAAAATCTTCATCGATGACCTTTGCAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGGGCTTTACATCAAAGAATGTGGAACAAA
TGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATGCTGGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAA
TTGAGCGAGACGTAGAGTAATGTGGACTATATGGGATCAGACATTCGATGCTCCCTTCTTAGTAGAGGATGGAACATTTTGTTTTGAAGCTCTCGGTGCTGAACTGGCGA
TGGATAGGCATTGATGAATTGATATTATTGTCAATTTTATCTTAAAAGGGTGAATTATCTGCTCACAGTCGACTAATCAGCTAATGGGGTTCCTTTTATGTAGACTTTTT
CCTGGGGGAATTCTATCGAGTGCTTGTTTCCATGTTTGTTTATTTCTAAATTATTGCTAATGTCAACAATTGTTCCGTATAGTTTGTCTATATTACAAATCAAC
Protein sequenceShow/hide protein sequence
MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAKDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLE
GVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET