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IVF0017813 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017813
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:24531147..24531604
RNA-Seq ExpressionIVF0017813
SyntenyIVF0017813
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035524.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]9.64e-4060.31Show/hide
Query:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR
        M +ASNE RT  RCQKPLEMHL + KRAELEDF   SQEN SEN+ + VFSSWGKK  P GFFPL  +          T +T      ML DTFS+GIG+
Subjt:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR

Query:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSG
         ASSL GE RCDPK SK WPMLPT  + SSG
Subjt:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSG

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]2.19e-3456.49Show/hide
Query:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR
        MANASNE +T  RCQKPLEM+L + K+ EL+DF CSSQENAS+N+PDS FSSWGKKR PYGFF LL           R      ++ G  ++ F++    
Subjt:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR

Query:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSG
          S L GEL CD K SKRWP+LPTSGE SSG
Subjt:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSG

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.54e-2236.73Show/hide
Query:  LHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL-------------------------------------------------------
        L ++KR EL+DF+CSSQENA+E +PDS+FSS  KKR P  FF LL                                                       
Subjt:  LHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL-------------------------------------------------------

Query:  -------------------------------LLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSG
                                       +L I+LSIF  RTPRT    +GML D FS+GIG++ASSL GEL C+PK SKRW MLPTS E SSG
Subjt:  -------------------------------LLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSG

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]6.56e-2759.6Show/hide
Query:  DFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSS
        DF+CSSQEN S+N+ DSVFSSW K   P       +L I LSIF    PRT     GML D FS GI R+A SL GEL CDPK S+RWPMLPTSG+ SS
Subjt:  DFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSS

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]3.63e-3336.36Show/hide
Query:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL----------------------------------
        MANASNE R   RCQKPLEMHL + KR ELEDF+CSSQEN SEN+PDS FSSWGKKR P GFFPLL                                  
Subjt:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL----------------------------------

Query:  --------------------------------------------------------LLDISLSIF-----------------------------------
                                                                +L  SLSIF                                   
Subjt:  --------------------------------------------------------LLDISLSIF-----------------------------------

Query:  -------------------RTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSG
                           R  TPRT    SGML DTFS GIGR+ASSL GEL CDPK SKRWPMLPT GE SSG
Subjt:  -------------------RTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSG

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein9.7e-2956.39Show/hide
Query:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR
        MANASNE +T  RCQKPLEM+L + K+ EL+DF CSSQENAS+N+PDS FSSWGKKR PYGFF LL           R      ++ G  ++ F++    
Subjt:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR

Query:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSGRR
          S L GEL CD K SKRWP+LPTSGE SSG R
Subjt:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSGRR

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.0e-1836.87Show/hide
Query:  LHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL-------------------------------------------------------
        L ++KR EL+DF+CSSQENA+E +PDS+FSS  KKR P  FF LL                                                       
Subjt:  LHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL-------------------------------------------------------

Query:  -------------------------------LLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSGRR
                                       +L I+LSIF  RTPRT    +GML D FS+GIG++ASSL GEL C+PK SKRW MLPTS E SSG R
Subjt:  -------------------------------LLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSGRR

A0A5D3CZ27 ULP_PROTEASE domain-containing protein1.6e-2058.82Show/hide
Query:  DFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSG
        DF+CSSQEN S+N+ DSVFSSW K   P       +L I LSIF    PRT     GML D FS GI R+A SL GEL CDPK S+RWPMLPTSG+ SS 
Subjt:  DFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSG

Query:  RR
         R
Subjt:  RR

A0A5D3DFP2 Uncharacterized protein1.1e-2736.46Show/hide
Query:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL----------------------------------
        MANASNE R   RCQKPLEMHL + KR ELEDF+CSSQEN SEN+PDS FSSWGKKR P GFFPLL                                  
Subjt:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLL----------------------------------

Query:  --------------------------------------------------------LLDISLSIF-----------------------------------
                                                                +L  SLSIF                                   
Subjt:  --------------------------------------------------------LLDISLSIF-----------------------------------

Query:  -------------------RTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSGRR
                           R  TPRT    SGML DTFS GIGR+ASSL GEL CDPK SKRWPMLPT GE SSG R
Subjt:  -------------------RTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELRCDPKWSKRWPMLPTSGEPSSGRR

A0A5D3E5W4 NBS-LRR type resistance protein1.2e-3160.31Show/hide
Query:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR
        M +ASNE RT  RCQKPLEMHL + KRAELEDF   SQEN SEN+ + VFSSWGKK  P GFFPL  +          T +T      ML DTFS+GIG+
Subjt:  MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGR

Query:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSG
         ASSL GE RCDPK SK WPMLPT  + SSG
Subjt:  DASSLVGELRCDPKWSKRWPMLPTSGEPSSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATGCTTCCAACGAGTGTCGAACGTTCAACCGGTGTCAGAAACCACTGGAAATGCACTTGCATCAAACGAAACGGGCTGAGCTTGAGGACTTCCAGTGCTCATC
CCAAGAAAATGCGAGCGAGAACAGCCCGGACTCTGTTTTCTCATCCTGGGGTAAAAAGCGGTTTCCCTACGGTTTCTTCCCTTTACTTCTATTGGACATAAGTCTTTCGA
TCTTCAGGACTCGTACTCCGAGGACCTTAAACGAAATTTCTGGTATGCTCCATGACACCTTTTCCAAAGGTATAGGTCGTGATGCGAGCTCGTTGGTGGGAGAACTGAGG
TGCGACCCAAAATGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACCCTCCTCCGGTCGAAGGAAACGGTCTGAGCTCGAGGACTTCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATGCTTCCAACGAGTGTCGAACGTTCAACCGGTGTCAGAAACCACTGGAAATGCACTTGCATCAAACGAAACGGGCTGAGCTTGAGGACTTCCAGTGCTCATC
CCAAGAAAATGCGAGCGAGAACAGCCCGGACTCTGTTTTCTCATCCTGGGGTAAAAAGCGGTTTCCCTACGGTTTCTTCCCTTTACTTCTATTGGACATAAGTCTTTCGA
TCTTCAGGACTCGTACTCCGAGGACCTTAAACGAAATTTCTGGTATGCTCCATGACACCTTTTCCAAAGGTATAGGTCGTGATGCGAGCTCGTTGGTGGGAGAACTGAGG
TGCGACCCAAAATGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACCCTCCTCCGGTCGAAGGAAACGGTCTGAGCTCGAGGACTTCCGGTGA
Protein sequenceShow/hide protein sequence
MANASNECRTFNRCQKPLEMHLHQTKRAELEDFQCSSQENASENSPDSVFSSWGKKRFPYGFFPLLLLDISLSIFRTRTPRTLNEISGMLHDTFSKGIGRDASSLVGELR
CDPKWSKRWPMLPTSGEPSSGRRKRSELEDFR