; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0017815 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017815
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr03:18028969..18029529
RNA-Seq ExpressionIVF0017815
SyntenyIVF0017815
Gene Ontology termsGO:0008380 - RNA splicing (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0010239 - chloroplast mRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443316.1 PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X2 [Cucumis melo]1.19e-4685.29Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KV
        K+
Subjt:  KV
XP_011652205.1 pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Cucumis sativus]1.19e-4685.29Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KV
        K+
Subjt:  KV
XP_016899695.1 PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X3 [Cucumis melo]1.88e-4784.62Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KVIG
        K+ G
Subjt:  KVIG
XP_031738070.1 pentatricopeptide repeat-containing protein At2g41720 isoform X2 [Cucumis sativus]9.75e-4785.29Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KV
        K+
Subjt:  KV
XP_031738071.1 pentatricopeptide repeat-containing protein At2g41720 isoform X3 [Cucumis sativus]1.88e-4784.62Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KVIG
        K+ G
Subjt:  KVIG
TrEMBL top hitse value%identityAlignment
A0A1S3B8F8 pentatricopeptide repeat-containing protein At2g41720 isoform X15.2e-3985.29Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KV
        K+
Subjt:  KV
A0A1S3B8H7 pentatricopeptide repeat-containing protein At2g41720 isoform X25.2e-3985.29Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KV
        K+
Subjt:  KV
A0A1S4DVF7 pentatricopeptide repeat-containing protein At2g41720 isoform X31.4e-3984.62Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KVIG
        K+ G
Subjt:  KVIG
A0A5D3DPI7 Pentatricopeptide repeat-containing protein5.2e-3985.29Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        MEANNIQ+DSIACSALMKAFN+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL+DWRKATDLINLMEPSFHL           FLGKSGKTEIMI
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KV
        K+
Subjt:  KV
A0A6J1J042 pentatricopeptide repeat-containing protein At2g41720 isoform X26.0e-3577.45Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI
        ME NNIQ+DSIACSALMKA+N+GNQASNVLILAEIMKEKGIPFNDANFFEMLSACS L+DWRKATD+I LMEPS HL           FLGKSGK EIM+
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHL-----------FLGKSGKTEIMI

Query:  KV
        K+
Subjt:  KV
SwissProt top hitse value%identityAlignment
Q8RWS8 Pentatricopeptide repeat-containing protein At2g417206.0e-2453.77Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEP------------SFHLFLGKSGKTEIM
        MEAN I+ DSIACSALM+AFN+G Q SNV +L ++M+EK IPF  A FFE+ SAC+ LQ+W++A DLI +M+P              HLF GKSGK E M
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEP------------SFHLFLGKSGKTEIM

Query:  IKVIGK
        +K+  K
Subjt:  IKVIGK
Arabidopsis top hitse value%identityAlignment
AT2G41720.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.2e-2553.77Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEP------------SFHLFLGKSGKTEIM
        MEAN I+ DSIACSALM+AFN+G Q SNV +L ++M+EK IPF  A FFE+ SAC+ LQ+W++A DLI +M+P              HLF GKSGK E M
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEP------------SFHLFLGKSGKTEIM

Query:  IKVIGK
        +K+  K
Subjt:  IKVIGK
AT2G41720.2 Tetratricopeptide repeat (TPR)-like superfamily protein4.2e-2553.77Show/hide
Query:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEP------------SFHLFLGKSGKTEIM
        MEAN I+ DSIACSALM+AFN+G Q SNV +L ++M+EK IPF  A FFE+ SAC+ LQ+W++A DLI +M+P              HLF GKSGK E M
Subjt:  MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEP------------SFHLFLGKSGKTEIM

Query:  IKVIGK
        +K+  K
Subjt:  IKVIGK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAAATAACATTCAAGTAGATTCTATAGCATGCTCTGCGTTGATGAAAGCATTTAATAGGGGAAACCAGGCTTCCAACGTTCTTATTCTGGCAGAAATTATGAA
AGAAAAGGGAATTCCTTTCAATGATGCCAATTTCTTTGAAATGTTGTCAGCTTGTAGCATACTGCAGGATTGGAGGAAAGCTACAGACTTGATAAATCTGATGGAGCCTT
CTTTTCATCTTTTTCTGGGAAAAAGTGGAAAGACGGAGATTATGATAAAGGTAATTGGAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCAAATAACATTCAAGTAGATTCTATAGCATGCTCTGCGTTGATGAAAGCATTTAATAGGGGAAACCAGGCTTCCAACGTTCTTATTCTGGCAGAAATTATGAA
AGAAAAGGGAATTCCTTTCAATGATGCCAATTTCTTTGAAATGTTGTCAGCTTGTAGCATACTGCAGGATTGGAGGAAAGCTACAGACTTGATAAATCTGATGGAGCCTT
CTTTTCATCTTTTTCTGGGAAAAAGTGGAAAGACGGAGATTATGATAAAGGTAATTGGAAAATAA
Protein sequenceShow/hide protein sequence
MEANNIQVDSIACSALMKAFNRGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILQDWRKATDLINLMEPSFHLFLGKSGKTEIMIKVIGK