; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0017861 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017861
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr02:15718884..15719264
RNA-Seq ExpressionIVF0017861
SyntenyIVF0017861
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]2.19e-4768.25Show/hide
Query:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPA------------HRKRE
        ++SH A KSLLNK F YYDELAYVFE DRATGRF+ETF DIGSNE A YEGFDMSDGND++FP MYSQGID+SQDDVR S+PA             RKR 
Subjt:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPA------------HRKRE

Query:  SQWEGKIDMIHMVLECMNDQLKTIVE
        SQ EG++D+I+M L+CMNDQL+TI+E
Subjt:  SQWEGKIDMIHMVLECMNDQLKTIVE

KAA0046602.1 retrotransposon protein [Cucumis melo var. makuwa]4.62e-4981.73Show/hide
Query:  HLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRESQW
        H ATK LLNK FYYYD+LAYVFERDRATGRFIETF DIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH            RKRESQW
Subjt:  HLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRESQW

Query:  EGKI
        EG++
Subjt:  EGKI

KAA0050806.1 retrotransposon protein [Cucumis melo var. makuwa]1.83e-4465.08Show/hide
Query:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRE
        MQSH   K LLNK F YYDELAY+F+RDR T RFIETF DIGSNE   YEGF+MSDGN+ +F S+YSQGIDMSQ+DV AS+PAH            RKR 
Subjt:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRE

Query:  SQWEGKIDMIHMVLECMNDQLKTIVE
        SQ +G+I +IHM L+CMNDQLK IVE
Subjt:  SQWEGKIDMIHMVLECMNDQLKTIVE

KAA0055946.1 retrotransposon protein [Cucumis melo var. makuwa]5.72e-5172.22Show/hide
Query:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRP------------AHRKRE
        MQSH A K LLNK F YYDELAYVF RDRATG+F ETFVDI SNE A YEGFDMSD NDM+FP MYSQ I MSQDDVRASRP            + RKRE
Subjt:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRP------------AHRKRE

Query:  SQWEGKIDMIHMVLECMNDQLKTIVE
        SQWEG+I+MIHM LEC NDQL+TIVE
Subjt:  SQWEGKIDMIHMVLECMNDQLKTIVE

TYK00096.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.84e-49100Show/hide
Query:  SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH
        SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH
Subjt:  SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH

TrEMBL top hitse value%identityAlignment
A0A5A7TT49 Retrotransposon protein6.3e-3981.73Show/hide
Query:  HLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRESQW
        H ATK LLNK FYYYD+LAYVFERDRATGRFIETF DIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH            RKRESQW
Subjt:  HLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRESQW

Query:  EGKI
        EG++
Subjt:  EGKI

A0A5A7U9D5 Retrotransposon protein3.6e-3465.08Show/hide
Query:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRE
        MQSH   K LLNK F YYDELAY+F+RDR T RFIETF DIGSNE   YEGF+MSDGN+ +F S+YSQGIDMSQ+DV AS+PAH            RKR 
Subjt:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH------------RKRE

Query:  SQWEGKIDMIHMVLECMNDQLKTIVE
        SQ +G+I +IHM L+CMNDQLK IVE
Subjt:  SQWEGKIDMIHMVLECMNDQLKTIVE

A0A5D3BP98 Putative nuclease HARBI13.7e-39100Show/hide
Query:  SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH
        SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH
Subjt:  SHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAH

A0A5D3BQI7 Retrotransposon protein4.1e-3868.25Show/hide
Query:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPA------------HRKRE
        ++SH A KSLLNK F YYDELAYVFE DRATGRF+ETF DIGSNE A YEGFDMSDGND++FP MYSQGID+SQDDVR S+PA             RKR 
Subjt:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPA------------HRKRE

Query:  SQWEGKIDMIHMVLECMNDQLKTIVE
        SQ EG++D+I+M L+CMNDQL+TI+E
Subjt:  SQWEGKIDMIHMVLECMNDQLKTIVE

A0A5D3DXB2 Retrotransposon protein2.2e-3972.22Show/hide
Query:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRP------------AHRKRE
        MQSH A K LLNK F YYDELAYVF RDRATG+F ETFVDI SNE A YEGFDMSD NDM+FP MYSQ I MSQDDVRASRP            + RKRE
Subjt:  MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRP------------AHRKRE

Query:  SQWEGKIDMIHMVLECMNDQLKTIVE
        SQWEG+I+MIHM LEC NDQL+TIVE
Subjt:  SQWEGKIDMIHMVLECMNDQLKTIVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGCATCTTGCAACGAAGAGCCTCCTTAACAAACCCTTTTACTATTACGACGAACTTGCATATGTGTTTGAGAGGGATAGAGCGACGGGTCGCTTTATAGAGAC
CTTCGTCGACATCGGGTCTAATGAGCATGCCGAGTATGAGGGGTTTGACATGTCGGATGGGAACGATATGAAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTCCC
AGGATGATGTACGCGCATCACGACCCGCTCACAGAAAGAGGGAAAGCCAGTGGGAGGGTAAGATTGACATGATACATATGGTCCTGGAGTGTATGAATGACCAACTCAAG
ACCATAGTCGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCGCATCTTGCAACGAAGAGCCTCCTTAACAAACCCTTTTACTATTACGACGAACTTGCATATGTGTTTGAGAGGGATAGAGCGACGGGTCGCTTTATAGAGAC
CTTCGTCGACATCGGGTCTAATGAGCATGCCGAGTATGAGGGGTTTGACATGTCGGATGGGAACGATATGAAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTCCC
AGGATGATGTACGCGCATCACGACCCGCTCACAGAAAGAGGGAAAGCCAGTGGGAGGGTAAGATTGACATGATACATATGGTCCTGGAGTGTATGAATGACCAACTCAAG
ACCATAGTCGAGTGA
Protein sequenceShow/hide protein sequence
MQSHLATKSLLNKPFYYYDELAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAHRKRESQWEGKIDMIHMVLECMNDQLK
TIVE