CuGenDBv2

Gene ID	IVF0017876
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr02:15253023..15253421
RNA-Seq Expression	IVF0017876
Synteny	IVF0017876
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043367.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.05e-86

96.97

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MTSDKELFKDLDISFKS+VKIGN AYLEVKGKGTVSTDSCAGTKLITKVLFI EIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQ KSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
        LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
Subjt:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG

TYJ98110.1 putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa]

5.51e-87

100

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
        LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
Subjt:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG

XP_038885771.1 uncharacterized protein LOC120076063 [Benincasa hispida]

1.01e-59

80.67

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MTSDKELFKDLD SFKSRVKIGNS YLEVKGK TVS +SC  TKLIT+VLF+PEIDQNLL+VGQLVEK FKVLFE+GKCLISDSNGN+LFKI MQ   F 
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQVNDTK
        L+ LE+EQ+AFKCQVNDT+
Subjt:  LNLLEEEQVAFKCQVNDTK

XP_038890984.1 uncharacterized protein LOC120080400 [Benincasa hispida]

3.68e-57

76.15

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MTSDKELFKDLD SFKSR+KIGN  YLEVKGKG VS +SCAGTKLITKVLF+PEIDQNLL+VGQLVEK FKVLFEEGKCLI  SNGNEL KI MQ KSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQVNDTKFWHK-RLGIFI
        L+ LE++Q+ FKCQV   K   K   GIF+
Subjt:  LNLLEEEQVAFKCQVNDTKFWHK-RLGIFI

XP_038902496.1 uncharacterized protein LOC120089156 [Benincasa hispida]

2.03e-58

85.22

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MTSDKELFKDLD SFKSRVKIGN  YLEVKGKGTVS +SCAGTKLIT+VLF+PEIDQNLL++GQLVEK FKVLFEE KCLISDSNGNELFKI MQ KSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQV
        L+ LEE Q+AFKCQV
Subjt:  LNLLEEEQVAFKCQV

TrEMBL top hits

e value

%identity

Alignment

A0A1U8HMJ5 uncharacterized protein LOC107887515

1.6e-38

73.68

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MT D++LFKDLD S KS+V+IGN  YLEVKG+GTV+ +SC GTKLI  VLF+PEIDQNLL+VGQLVEK FKV+FEEG CLI DS+GNELF I MQ+KSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQ
        LN  E+EQVA KCQ
Subjt:  LNLLEEEQVAFKCQ

A0A5A7TNI4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.0e-64

96.97

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MTSDKELFKDLDISFKS+VKIGN AYLEVKGKGTVSTDSCAGTKLITKVLFI EIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQ KSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
        LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
Subjt:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG

A0A5D3BE46 Putative transposon Ty5-1 protein YCL075W family

4.9e-67

100

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
        LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
Subjt:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG

A0A6J1DWT9 uncharacterized protein LOC111025149

6.8e-45

73.48

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        M SDKELFKDLD SFKSRVKIGN  YLEVKGK T S +SC GTKLIT+VLF+P I QNLL+VGQLVEK FKVLFE  KCLISDSNGNE FKI MQ KSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG
        L+ +E++Q+  KCQVNDT+  HKRLG F  +G
Subjt:  LNLLEEEQVAFKCQVNDTKFWHKRLGIFISKG

A0A6P4PSP3 uncharacterized protein LOC108481577

9.6e-39

73.68

Show/hide

Query:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS
        MT D++LFKDLD S KS+V+IGN  YLEVKG+GTV+ +SC GTKLI+ VLF+PEIDQNLL+VGQLVEK FKV+FEEG CLI DS+GNELF I MQ+KSFS
Subjt:  MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFS

Query:  LNLLEEEQVAFKCQ
        LN  E+EQVA KCQ
Subjt:  LNLLEEEQVAFKCQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G20980.1 Gag-Pol-related retrotransposon family protein

3.1e-05

33.01

Show/hide

Query:  MTSDKELFKDLDISFKSRVKI-----GNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGK-CLISDSNGNELFKINM
        MT   + F  LD S K +VK        +    V+G G V+  +  G K I  VL++P I+ N L+V QL    F+V  E    C + D    ++F  NM
Subjt:  MTSDKELFKDLDISFKSRVKI-----GNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGK-CLISDSNGNELFKINM

Query:  QRK
          K
Subjt:  QRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACAAGTGACAAAGAGTTGTTCAAGGACCTTGACATATCATTCAAGTCAAGGGTGAAAATAGGAAATAGTGCGTATTTAGAAGTAAAGGGGAAAGGCACAGTGTCAAC
AGACAGTTGTGCTGGAACCAAGTTGATTACTAAAGTGTTGTTTATCCCTGAGATTGATCAAAACTTGTTAAACGTTGGTCAACTAGTAGAGAAGGAATTCAAAGTGTTGT
TTGAAGAAGGAAAGTGCCTAATTTCTGATTCCAATGGGAATGAGCTCTTCAAAATAAACATGCAACGCAAGAGCTTCTCGTTGAATCTGCTTGAAGAAGAGCAAGTAGCT
TTCAAGTGTCAAGTGAATGACACTAAGTTCTGGCATAAGAGGTTGGGCATTTTCATCAGTAAGGGTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLLNVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVA
FKCQVNDTKFWHKRLGIFISKG

IVF0017876 (gene) of Melon (IVF77) v1 genome