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IVF0017892 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017892
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationchr02:19797173..19797391
RNA-Seq ExpressionIVF0017892
SyntenyIVF0017892
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037655.1 hypothetical protein E6C27_scaffold277G003180 [Cucumis melo var. makuwa]1.24e-0953.7Show/hide
Query:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG
        +LQE G+  T KNVG + KY+  T  D  + V K VGRNASG+ FPT +Q+GVG
Subjt:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG

KAA0038928.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]5.72e-0850Show/hide
Query:  NSLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP
        ++LQE+G    HK V  SGK +   I D +  V  T+ RN S D FPT HQQGV NT LP
Subjt:  NSLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP

KAA0039107.1 hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa]3.09e-0957.14Show/hide
Query:  HKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP
        HKNV  SGK I K I + +S + K VGRN  G+ FP  HQQG+GN LLP
Subjt:  HKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP

TYK19835.1 hypothetical protein E5676_scaffold811G00420 [Cucumis melo var. makuwa]1.10e-0750Show/hide
Query:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG
        +LQE G+  THK VG + KY+ K   D ++ V K VGRNAS + FPT +Q  VG
Subjt:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG

TYK22375.1 hypothetical protein E5676_scaffold1428G001000 [Cucumis melo var. makuwa]1.16e-0751.85Show/hide
Query:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG
        SLQE G+ STHK VG + KY+ K   D ++ V K VGRNAS + FPT     VG
Subjt:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG

TrEMBL top hitse value%identityAlignment
A0A5A7T7S7 Retrotransposon protein, putative, Ty3-gypsy subclass7.6e-0650Show/hide
Query:  NSLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP
        ++LQE+G    HK V  SGK +   I D +  V  T+ RN S D FPT HQQGV NT LP
Subjt:  NSLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP

A0A5A7TBZ3 Uncharacterized protein7.6e-0657.14Show/hide
Query:  HKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP
        HKNV  SGK I K I + +S + K VGRN  G+ FP  HQQG+GN LLP
Subjt:  HKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLP

A0A5A7TUB6 Uncharacterized protein8.4e-0550.91Show/hide
Query:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGN
        +LQE G+  THKNVG S K +EK   D    V   V RN SG+ FP  +Q GVGN
Subjt:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGN

A0A5D3BKQ2 Uncharacterized protein8.4e-0548.21Show/hide
Query:  LNSLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG
        + +LQE G   THK VG + KY+ K   D ++ V K VGRNAS + FPT +Q  VG
Subjt:  LNSLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG

A0A5D3DHG4 Uncharacterized protein4.5e-0653.7Show/hide
Query:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG
        +LQE G+  T KNVG + KY+  T  D  + V K VGRNASG+ FPT +Q+GVG
Subjt:  SLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGCTTCTTAAATTCACTACAAGAAATTGGACTATTCTCGACGCACAAAAATGTCGGGAATAGTGGAAAATATATCGAGAAAACAATTTCCGACACAAAATCATG
CGTCGAGAAGACCGTAGGAAGAAATGCGTCGGGAGACCTTTTCCCGACGCGTCACCAACAAGGCGTCGGGAATACCCTTCTTCCGATGTTGTTGATGCGTCGGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTATGCTTCTTAAATTCACTACAAGAAATTGGACTATTCTCGACGCACAAAAATGTCGGGAATAGTGGAAAATATATCGAGAAAACAATTTCCGACACAAAATCATG
CGTCGAGAAGACCGTAGGAAGAAATGCGTCGGGAGACCTTTTCCCGACGCGTCACCAACAAGGCGTCGGGAATACCCTTCTTCCGATGTTGTTGATGCGTCGGGAATAA
Protein sequenceShow/hide protein sequence
MLCFLNSLQEIGLFSTHKNVGNSGKYIEKTISDTKSCVEKTVGRNASGDLFPTRHQQGVGNTLLPMLLMRRE