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IVF0017894 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017894
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionexopolygalacturonase-like
Genome locationchr01:3845073..3845524
RNA-Seq ExpressionIVF0017894
SyntenyIVF0017894
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059116.1 exopolygalacturonase-like [Cucumis melo var. makuwa]7.35e-6889.08Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        ASP+ G ATNMHFLDI +VNVSNPILIDQEY PWNQCNRKIPSKIKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVKVANIDL+ NGIKGSLTSECMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYT
        VKPII G QNPPICSSSYT
Subjt:  VKPIILGIQNPPICSSSYT

XP_008455553.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]7.35e-6889.08Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        ASP+ G ATNMHFLDI +VNVSNPILIDQEY PWNQCNRKIPSKIKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVKVANIDL+ NGIKGSLTSECMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYT
        VKPII G QNPPICSSSYT
Subjt:  VKPIILGIQNPPICSSSYT

XP_011659699.2 exopolygalacturonase [Cucumis sativus]5.34e-6886.18Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        ASP+ G ATNMHF DI +VNVSNPILIDQEY PWNQCNR+IPS IKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVKVANIDL+ NGIKGS+TSECMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYTIASK
        VKPII GIQNPPICSSSYT ASK
Subjt:  VKPIILGIQNPPICSSSYTIASK

XP_031742552.1 exopolygalacturonase-like [Cucumis sativus]1.75e-6684.43Show/hide
Query:  SPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNV
        SP+ G ATNMHF DI +VNVSNPI+IDQEY PWNQCNRKIPS IKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVK++NIDLI NGIKGS+TS+CMNV
Subjt:  SPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNV

Query:  KPIILGIQNPPICSSSYTIASK
        KPII GIQNPPICSSSYT ASK
Subjt:  KPIILGIQNPPICSSSYTIASK

XP_031745268.1 exopolygalacturonase-like [Cucumis sativus]3.95e-6279.67Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        +SP+ G ATNMHF DI +VNVSNPILIDQEY PWNQCNR+IPS IKIN VSFKNI+G+SATPVAVKL CSSN PC+EVKVANIDL+ NGI G +TS+CMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYTIASK
        VKPII GIQNP ICSSSYT ASK
Subjt:  VKPIILGIQNPPICSSSYTIASK

TrEMBL top hitse value%identityAlignment
A0A0A0K3B7 Uncharacterized protein7.6e-5486.18Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        ASP+ G ATNMHF DI +VNVSNPILIDQEY PWNQCNR+IPS IKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVKVANIDL+ NGIKGS+TSECMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYTIASK
        VKPII GIQNPPICSSSYT ASK
Subjt:  VKPIILGIQNPPICSSSYTIASK

A0A1S3C2F4 exopolygalacturonase-like7.6e-5489.08Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        ASP+ G ATNMHFLDI +VNVSNPILIDQEY PWNQCNRKIPSKIKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVKVANIDL+ NGIKGSLTSECMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYT
        VKPII G QNPPICSSSYT
Subjt:  VKPIILGIQNPPICSSSYT

A0A5A7UY44 Exopolygalacturonase-like7.6e-5489.08Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        ASP+ G ATNMHFLDI +VNVSNPILIDQEY PWNQCNRKIPSKIKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVKVANIDL+ NGIKGSLTSECMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYT
        VKPII G QNPPICSSSYT
Subjt:  VKPIILGIQNPPICSSSYT

A0A5D3DD75 Exopolygalacturonase-like7.6e-5489.08Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        ASP+ G ATNMHFLDI +VNVSNPILIDQEY PWNQCNRKIPSKIKINKVSFKNIRG+SATPVAVKL CSSNLPC+EVKVANIDL+ NGIKGSLTSECMN
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYT
        VKPII G QNPPICSSSYT
Subjt:  VKPIILGIQNPPICSSSYT

A0A6J1EL45 exopolygalacturonase-like1.1e-4476.67Show/hide
Query:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN
        AS   GTATNM FLDII+VNVSNPILIDQEY PWNQCNRKIPSKIKI+KVSFKNIRG+ ATPVA+KL CS +LPC EVKV +IDL  NGIKGS+TS+C N
Subjt:  ASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMN

Query:  VKPIILGIQNPPICSSSYTI
        V+PII G QNP ICSS Y +
Subjt:  VKPIILGIQNPPICSSSYTI

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)2.4e-2854.46Show/hide
Query:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII
        G A+ MHF DI + +V  PILIDQ Y P+NQC  ++PS +K++K+SFKNI+GTS T  AVKL CS + PC  V++A+IDL  +G  G  TS C N+KP I
Subjt:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII

Query:  LGIQNPPICSSS
         G Q P ICS S
Subjt:  LGIQNPPICSSS

Q05967 Polygalacturonase1.4e-2848.72Show/hide
Query:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII
        G   ++HF DII+ NVSNP++IDQ Y P+N+CN+ +PS++KI+KVSF+NI+GTS T  AV L  S  +PC+ ++V +ID+  +G +G   S C N+KP +
Subjt:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII

Query:  LGIQNPPICSSSYTIAS
         G QNPP+C++S   +S
Subjt:  LGIQNPPICSSSYTIAS

Q39766 Polygalacturonase5.3e-2852.73Show/hide
Query:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII
        G  + +HF DI + NVS+PILIDQ+Y PWN+C +   SK+K++ +SFKNIRGTSA P A+K  CS + PC+ V++A+ID+  NG + + TS+C+NVKPI 
Subjt:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII

Query:  LGIQNPPICS
        +G  NP  CS
Subjt:  LGIQNPPICS

Q39786 Polygalacturonase1.5e-2752.73Show/hide
Query:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII
        G  + +HF DI + NVS+PILIDQ+Y PWN+C +   SK+K++ +SFKNIRGTSA P A+K  CS + PC+ V++A+ID+  NG + + TS+C+NVKPI 
Subjt:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII

Query:  LGIQNPPICS
         G  NP  CS
Subjt:  LGIQNPPICS

Q40312 Polygalacturonase5.3e-2851.82Show/hide
Query:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL
        T +++HF DI + NV NP++IDQEYYPWNQC++K PSKIK++K+SFKN++GTS T   V L CSS +PC  V++ N+DL  NG     T++C NVKP++ 
Subjt:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL

Query:  GIQNPPICSS
        G    P+C +
Subjt:  GIQNPPICSS

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein1.5e-3056.36Show/hide
Query:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL
        TA+++HF DII+ +VSNPILIDQEY PWNQCN++  S IK+  +SFKNIRGTS    AVKL CS   PC+ V++ +ID+  NG  G  T  C NV P IL
Subjt:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL

Query:  GIQNPPICSS
        G Q+P  CS+
Subjt:  GIQNPPICSS

AT3G07830.1 Pectin lyase-like superfamily protein9.2e-2851.82Show/hide
Query:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL
        TA+N+HF +II+ NVSNPILIDQEY PWNQCN++  S IK+  +SF+ IRGTS    AVKL CS   PC+ V+V +I++   G  G  T  C NV+P ++
Subjt:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL

Query:  GIQNPPICSS
        G Q P  C++
Subjt:  GIQNPPICSS

AT3G07840.1 Pectin lyase-like superfamily protein5.8e-3055.75Show/hide
Query:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL
        TA+ +HF +II+ NVSNPILIDQEY PWNQCN++ PS IK+  +SFKNIRGTS    AVKL CS   PC  V++ NI+L   G  G  T  C NV P ++
Subjt:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL

Query:  GIQNPPICSSSYT
        G QNP  CS+  T
Subjt:  GIQNPPICSSSYT

AT3G14040.1 Pectin lyase-like superfamily protein1.7e-2649.09Show/hide
Query:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII
        G A+N+ F DI + NVS P+LIDQEY P+  C   +PSK+K++ V+ KNI+GTSAT VAVKL CS  +PC  + +++I+L+ NG +G   S C N+KPI+
Subjt:  GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPII

Query:  LGIQNPPICS
         G   P  C+
Subjt:  LGIQNPPICS

AT5G48140.1 Pectin lyase-like superfamily protein1.7e-2952.21Show/hide
Query:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL
        TA+++HF +I++ NVSNPILIDQEY PWNQCN++ PS IK+  +SFK IRGTS    AVKL CS   PC+ V+V ++++   G  G  T +C NV P ++
Subjt:  TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIIL

Query:  GIQNPPICSSSYT
        G Q P  CSS  T
Subjt:  GIQNPPICSSSYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGCCCTATTGTTGGTACTGCCACCAACATGCATTTTTTAGACATTATAATAGTCAATGTTAGCAACCCAATTCTCATAGACCAGGAGTACTACCCATGGAATCA
ATGCAATCGCAAGATTCCATCAAAGATTAAGATTAATAAAGTGAGCTTCAAAAACATTAGAGGAACTTCTGCAACTCCAGTAGCAGTCAAACTTTTTTGTAGTAGCAACC
TACCATGTAAAGAAGTAAAAGTGGCTAACATTGACCTCATTTCTAATGGAATAAAAGGCTCTCTTACATCTGAATGCATGAATGTGAAACCAATCATTTTAGGAATACAA
AATCCTCCGATTTGCTCATCCTCTTACACTATTGCTTCAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGCCCTATTGTTGGTACTGCCACCAACATGCATTTTTTAGACATTATAATAGTCAATGTTAGCAACCCAATTCTCATAGACCAGGAGTACTACCCATGGAATCA
ATGCAATCGCAAGATTCCATCAAAGATTAAGATTAATAAAGTGAGCTTCAAAAACATTAGAGGAACTTCTGCAACTCCAGTAGCAGTCAAACTTTTTTGTAGTAGCAACC
TACCATGTAAAGAAGTAAAAGTGGCTAACATTGACCTCATTTCTAATGGAATAAAAGGCTCTCTTACATCTGAATGCATGAATGTGAAACCAATCATTTTAGGAATACAA
AATCCTCCGATTTGCTCATCCTCTTACACTATTGCTTCAAAATGA
Protein sequenceShow/hide protein sequence
MASPIVGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLISNGIKGSLTSECMNVKPIILGIQ
NPPICSSSYTIASK