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IVF0017971 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017971
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionpolyadenylation factor subunit 2-like
Genome locationchr11:26905936..26906166
RNA-Seq ExpressionIVF0017971
SyntenyIVF0017971
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575060.1 hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sororia]4.01e-1361.84Show/hide
Query:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTIG
        +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA MQ  SDSIDLL TIG
Subjt:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTIG
XP_022959345.1 protein SRC2-like [Cucurbita moschata]2.03e-1361.84Show/hide
Query:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTIG
        +T  KK GMS++LG+GAGLL   VGGLLLG+  ADAGAA  SF+ FS   GGG     DA MQ  SDSIDLL TIG
Subjt:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTIG
XP_023006250.1 polyadenylation factor subunit 2-like [Cucurbita maxima]2.03e-1361.84Show/hide
Query:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTIG
        +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA MQ +SDSIDLL TIG
Subjt:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTIG
XP_023548312.1 formin-like protein 20 [Cucurbita pepo subsp. pepo]1.55e-1261.33Show/hide
Query:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTI
        +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA MQ +SDSIDLL TI
Subjt:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDY-DASMQPMSDSIDLLDTI
XP_038875072.1 formin-like protein 20 [Benincasa hispida]2.57e-2477.03Show/hide
Query:  NASTKTKKLGMSEILGMGAGLLVGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDYDASMQPMSDSIDLLDTIG
        NA TK KK GMS+ILGMGAGL VGGLLLGEL AD GA   SFDLFS   GGGG+DYDASMQ MSDS+DLL TIG
Subjt:  NASTKTKKLGMSEILGMGAGLLVGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDYDASMQPMSDSIDLLDTIG
TrEMBL top hitse value%identityAlignment
A0A6J1H610 protein SRC2-like1.6e-0961.84Show/hide
Query:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDASMQPMSDSIDLLDTIG
        +T  KK GMS++LG+GAGLL   VGGLLLG+  ADAGAA  SF+ FS   GGG     DA MQ  SDSIDLL TIG
Subjt:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDASMQPMSDSIDLLDTIG
A0A6J1KZM6 polyadenylation factor subunit 2-like1.6e-0961.84Show/hide
Query:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDASMQPMSDSIDLLDTIG
        +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA MQ +SDSIDLL TIG
Subjt:  STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDASMQPMSDSIDLLDTIG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGCCAATGCTTCGACAAAGACAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGA
TGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATA
CCATTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGCCAATGCTTCGACAAAGACAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGA
TGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATA
CCATTGGGTGA
Protein sequenceShow/hide protein sequence
MLANASTKTKKLGMSEILGMGAGLLVGGLLLGELTADAGAARSFDLFSHLMGGGGMDYDASMQPMSDSIDLLDTIG