; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0017986 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0017986
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationchr12:11891897..11894513
RNA-Seq ExpressionIVF0017986
SyntenyIVF0017986
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR021099 - Plant organelle RNA recognition domain
IPR045040 - PORR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139581.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Cucumis sativus]1.27e-19696.82Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQK+KFILLRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        E DGKAHL+LENWDSSLA+CARED F KARDLSSCG GKRVRISKDGNF GPFAFKMCFP GFRPNTSYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

XP_008461321.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]5.34e-205100Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

XP_022973877.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima]3.25e-16986.22Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGK+MFLRLNR          HVF+HK+S FLWVLMRHKSSGGMRPKRKIYYRV ELDKVM+LQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIE+YSSIFYV SGS R  PYVRL+NKAE IASEE KVKS+MEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        E DGKAHL+LENWDSSLA+ ARE+GFG+ARD+SSC + KRVRISKDGNF GPFAFKMCFPPGFRPN SYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

XP_023511734.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]3.25e-16986.22Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGK+MFLRLNR          HVF+HK+S FLWVL+RHKSSGGMRPKRKIYYRV ELDKVM+LQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYV SGS R  PYVRL+NKAE IASEE KVKSAMEPI+VKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        E DGKAHL+LENWDSSLA+ ARE+GFG+ARD+SSC + KRVRISKDGNF GPFAFKMCFPPGFRPN SYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

XP_038894837.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic isoform X1 [Benincasa hispida]7.13e-17988.69Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGKSMFLRLNRY N YPIS  HVFDHK+SAFLWV MRHK+SGGMRPKRKIYYRV +LDKVMDLQKKPSLILKLINIIQSQK KFI LRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYV SGSSR+PPYVRLSNKAE IASEEDKV+SAM+PIL+KNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        E DGKAHL+LENWDSSLA+ ARE+ F  ARDLSSC  GKRVRISKDGNF GP+AFK+CFPPGFRPN SYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

TrEMBL top hitse value%identityAlignment
A0A0A0LVT2 PORR domain-containing protein1.0e-15496.82Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQK+KFILLRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        E DGKAHL+LENWDSSLA+CARED F KARDLSSCG GKRVRISKDGNF GPFAFKMCFP GFRPNTSYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

A0A1S3CE49 protein ROOT PRIMORDIUM DEFECTIVE 14.3e-161100Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

A0A5A7T281 Protein ROOT PRIMORDIUM DEFECTIVE 14.3e-161100Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

A0A6J1F3A5 protein WHAT'S THIS FACTOR 1 homolog1.4e-13285.87Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGK+M LRLNR          HVF+HK+S FLWVLMRHKSSGGMRPKRKIYYRV ELDKVM+LQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIEKYSSIFYV SGS R  PYVRL+NKAE IASEE KVKSAMEPI+VKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        E DGKAHL+LENWDSSLA+ ARE+GFG+ RD+SSC + KRVRISKDGNF GPFAFKMCFPPGFRPN SYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

A0A6J1I8Q3 protein WHAT'S THIS FACTOR 1 homolog1.3e-13386.22Show/hide
Query:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK
        MNGK+MFLRLNR          HVF+HK+S FLWVLMRHKSSGGMRPKRKIYYRV ELDKVM+LQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQK
Subjt:  MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQK

Query:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK
        WNFMAVIE+YSSIFYV SGS R  PYVRL+NKAE IASEE KVKS+MEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVK
Subjt:  WNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVK

Query:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        E DGKAHL+LENWDSSLA+ ARE+GFG+ARD+SSC + KRVRISKDGNF GPFAFKMCFPPGFRPN SYLEHLERWQKMDFPS
Subjt:  EADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

SwissProt top hitse value%identityAlignment
A0MFS5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic1.2e-1933.16Show/hide
Query:  MRPKRKIYYRVAEL--DKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEK---EVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMI
        + P R    R  EL  D V+   KK  L+L +  I+ SQ  + + LR L K   ++G  ++  F+A++ KY  +F +   G+ S R     +++++AE +
Subjt:  MRPKRKIYYRVAEL--DKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEK---EVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMI

Query:  ASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE
          +E ++++ +E +LV  LRKL+M+S+D R+ LE I  + ++LGLP +F+ ++  +YP++F V        L L +WD  LAV A E
Subjt:  ASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE

B6TTV8 Protein WHAT'S THIS FACTOR 1, chloroplastic2.5e-1733.33Show/hide
Query:  AELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDL---EKEVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEP
        A  D V+   KK  L+LKL NI+ +Q  + + LR+L    +++G  +K   +A++ ++  +F V   G  S R     RL+  AE +  +E ++++  E 
Subjt:  AELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDL---EKEVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEP

Query:  ILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE
        + V  LRKLLM+S + R+ +E +  +  +LGLP +F+ ++  +YP++F V   D    L L +WD  LAV A E
Subjt:  ILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE

Q65XL5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic1.3e-1835.67Show/hide
Query:  DKVMDLQKKPSLILKLINIIQSQKHKFILLRDL---EKEVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILV
        D V+   KK  L+LKL NI+ S   + + LRDL    +++G  +K   +A+++++  +F V   G  S R     RL+  AE +  +E  +K+  E + V
Subjt:  DKVMDLQKKPSLILKLINIIQSQKHKFILLRDL---EKEVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILV

Query:  KNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE
          LRKLLM+S D R+ +E I  + ++LGLP +F+ ++  +YP++F V + D    L L +WD  LAV A E
Subjt:  KNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE

Q689D6 Protein ROOT PRIMORDIUM DEFECTIVE 19.9e-1427.56Show/hide
Query:  VLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFI---LLRDLEKEVGFVQKWNFM-AVIEKYSSIFYVGSGSSRVPPYVRLS
        +L++  S     PK++   R    D  M+++KK   ++K  ++I SQ +  I   LL  L + +G   K +   A + K+  +F +     +   Y RL+
Subjt:  VLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFI---LLRDLEKEVGFVQKWNFM-AVIEKYSSIFYVGSGSSRVPPYVRLS

Query:  NKA-EMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSV--KEADGKAHLNLENWDSSLAVCAREDGFG
         KA + I  E + V   + P  V  LRKL+M+S   R+ LE++    +E GLP DF+ S+I K+P+FF +   E     ++ +   D +L++CA E    
Subjt:  NKA-EMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSV--KEADGKAHLNLENWDSSLAVCAREDGFG

Query:  KARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDF
        + R++     G      +       F+F + FPPGF+    +   + +WQ++ +
Subjt:  KARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDF

Arabidopsis top hitse value%identityAlignment
AT1G79120.1 Ubiquitin carboxyl-terminal hydrolase family protein2.8e-8864.94Show/hide
Query:  WVLMRHKS-SGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNK
        +V +RHKS  GG RPK+K+Y+RV +LDK +DL KKPSLIL+L +IIQ+QKH  +LLRDLEK VGFV KWN MA IEKY +IFYVG G  + PP+V L+ K
Subjt:  WVLMRHKS-SGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQKWNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNK

Query:  AEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCAREDGFGKARDL
        A+ IA+EE +   +MEPILV NLRKLLM+SVDCRVPLE +EFI S +GLP DFK++LIPKY EFFS+K  +GK +L LENWDSSLA+ ARED   +    
Subjt:  AEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCAREDGFGKARDL

Query:  SSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
         S G  KRVRI+KDGNF G  AFK+ FPPGFRPN SYLE  E+WQKM+FPS
Subjt:  SSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

AT4G01037.1 Ubiquitin carboxyl-terminal hydrolase family protein8.6e-2133.16Show/hide
Query:  MRPKRKIYYRVAEL--DKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEK---EVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMI
        + P R    R  EL  D V+   KK  L+L +  I+ SQ  + + LR L K   ++G  ++  F+A++ KY  +F +   G+ S R     +++++AE +
Subjt:  MRPKRKIYYRVAEL--DKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEK---EVGFVQKWNFMAVIEKYSSIFYV---GSGSSRVPPYVRLSNKAEMI

Query:  ASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE
          +E ++++ +E +LV  LRKL+M+S+D R+ LE I  + ++LGLP +F+ ++  +YP++F V        L L +WD  LAV A E
Subjt:  ASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARE

AT4G33495.1 Ubiquitin carboxyl-terminal hydrolase family protein7.1e-1527.56Show/hide
Query:  VLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFI---LLRDLEKEVGFVQKWNFM-AVIEKYSSIFYVGSGSSRVPPYVRLS
        +L++  S     PK++   R    D  M+++KK   ++K  ++I SQ +  I   LL  L + +G   K +   A + K+  +F +     +   Y RL+
Subjt:  VLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFI---LLRDLEKEVGFVQKWNFM-AVIEKYSSIFYVGSGSSRVPPYVRLS

Query:  NKA-EMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSV--KEADGKAHLNLENWDSSLAVCAREDGFG
         KA + I  E + V   + P  V  LRKL+M+S   R+ LE++    +E GLP DF+ S+I K+P+FF +   E     ++ +   D +L++CA E    
Subjt:  NKA-EMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSV--KEADGKAHLNLENWDSSLAVCAREDGFG

Query:  KARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDF
        + R++     G      +       F+F + FPPGF+    +   + +WQ++ +
Subjt:  KARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDF

AT5G21970.1 Ubiquitin carboxyl-terminal hydrolase family protein1.3e-1323.71Show/hide
Query:  MNGKSMFLRLNRYPNSYPI----SETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLE---K
        M G   +L+  R  N++ +     E +V  + +S+F  V +R  +S      R    RV EL+   +  K  S ++ L+ +++ ++   + +R  E   +
Subjt:  MNGKSMFLRLNRYPNSYPI----SETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLE---K

Query:  EVGFVQKWNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKY
        ++   +       I K   +F +     R   +  L+   E +  E DK+         +++ + LM+SVD ++PL+ I     + GLP DF+ + +  +
Subjt:  EVGFVQKWNFMAVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKY

Query:  PEFFS-VKEADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
        P+ F  VK  DG+ +L L +W+ + A+   E    K   ++     K   +S         AF M FPP ++    Y   +E +QK  + S
Subjt:  PEFFS-VKEADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS

AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein3.0e-1326.81Show/hide
Query:  ELDKVMDLQKKPSLILKLINIIQSQ---KHKFILLRDLEKEVGFVQKWNFMAVIEKYSSIF----YVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEP
        ELD V+  +K    +  L+++I +    +     L     ++G  Q+    A I +Y +IF    Y  S  + VP +       ++   E D  +     
Subjt:  ELDKVMDLQKKPSLILKLINIIQSQ---KHKFILLRDLEKEVGFVQKWNFMAVIEKYSSIF----YVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEP

Query:  ILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFS-VKEADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGN
        +LV+ L KLLML+ +  + L +I+ +  +LGLP D++ SLI K+P+ FS VK +     L L +WD  LAV                    ++++ +D  
Subjt:  ILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFS-VKEADGKAHLNLENWDSSLAVCAREDGFGKARDLSSCGSGKRVRISKDGN

Query:  FCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS
             AF + F  GF      +E L+ WQ++ + S
Subjt:  FCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGAAAATCTATGTTCCTACGCCTAAATCGATACCCCAACTCTTACCCAATTTCTGAAACACATGTTTTTGATCATAAGAAGTCGGCTTTTCTATGGGTTTTGAT
GAGACACAAATCTAGCGGTGGAATGAGACCAAAGAGAAAAATATATTATAGAGTTGCTGAACTGGACAAAGTCATGGACTTGCAAAAAAAGCCATCCCTTATACTAAAGC
TTATTAACATTATCCAATCTCAAAAGCACAAATTTATATTATTGAGGGACCTGGAGAAAGAAGTAGGATTTGTCCAAAAATGGAACTTCATGGCTGTTATTGAGAAGTAC
TCTTCGATCTTTTATGTCGGCTCTGGAAGTAGTAGAGTGCCCCCTTATGTTAGACTCTCCAATAAAGCTGAAATGATTGCTAGTGAAGAAGATAAGGTAAAGAGTGCAAT
GGAACCAATCTTGGTAAAGAATTTGAGGAAGCTGTTGATGCTGTCAGTTGATTGTCGAGTACCGCTTGAGAATATAGAATTCATTGCATCTGAATTGGGTTTGCCTTGTG
ACTTCAAAACTTCATTGATTCCTAAGTACCCTGAATTCTTTTCAGTGAAGGAAGCTGATGGGAAAGCTCATCTAAATTTGGAAAACTGGGATTCTTCACTTGCAGTCTGT
GCTCGAGAAGATGGATTTGGTAAAGCTAGAGATTTATCTTCTTGTGGATCTGGAAAAAGAGTTAGAATCTCAAAAGATGGCAACTTTTGTGGTCCTTTTGCATTCAAGAT
GTGTTTTCCTCCTGGCTTTAGGCCAAACACGAGTTACCTTGAACATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCCCGTACTTGA
mRNA sequenceShow/hide mRNA sequence
GTTGAAACACTTTACCCTAACCCTCCAAATAAAAATCCGATCTTTCCAATTTTCTCATCTTCTTCCTTCCTCCTTCGCCATGCTGACCACGAGAAAATGGTTGGCGATGG
CGAGCCTTCCATGATGGCGTCGTGCTGTCGCCGCGAGCGTTTATCTTCTTTGTCTTGGTCTCGCAGCGTTTCTATTATTTTTGACGAGTTTCAGCGGTAGTCCACTCTCG
GATTGGTCCAAGTCACTTTACCCCCATCCATACCGTGCATTTCTGCAAGTTTGAACACTTTCGAACACCAACCATCTTAAATCAGAGTCCATTTGGGACAAAATTTGCAA
GAAGCATTGCCGATTCCAAAGTCAGGGTTTCTGGTGTTGCTTGTGGAAACTGAATCTGATAAAAGTCCTTAATTTCCAATAGAGAAATGAATAGGTTTTTACATTAGAAT
CGGAGGTAGTATTGTTTGATCAAGGGACTTTCGAGCTTCCTCTAAAACTATTTGATATTTGTTGCAACAGAGTTTAGGAGTTTAAAATGAATGGAAAATCTATGTTCCTA
CGCCTAAATCGATACCCCAACTCTTACCCAATTTCTGAAACACATGTTTTTGATCATAAGAAGTCGGCTTTTCTATGGGTTTTGATGAGACACAAATCTAGCGGTGGAAT
GAGACCAAAGAGAAAAATATATTATAGAGTTGCTGAACTGGACAAAGTCATGGACTTGCAAAAAAAGCCATCCCTTATACTAAAGCTTATTAACATTATCCAATCTCAAA
AGCACAAATTTATATTATTGAGGGACCTGGAGAAAGAAGTAGGATTTGTCCAAAAATGGAACTTCATGGCTGTTATTGAGAAGTACTCTTCGATCTTTTATGTCGGCTCT
GGAAGTAGTAGAGTGCCCCCTTATGTTAGACTCTCCAATAAAGCTGAAATGATTGCTAGTGAAGAAGATAAGGTAAAGAGTGCAATGGAACCAATCTTGGTAAAGAATTT
GAGGAAGCTGTTGATGCTGTCAGTTGATTGTCGAGTACCGCTTGAGAATATAGAATTCATTGCATCTGAATTGGGTTTGCCTTGTGACTTCAAAACTTCATTGATTCCTA
AGTACCCTGAATTCTTTTCAGTGAAGGAAGCTGATGGGAAAGCTCATCTAAATTTGGAAAACTGGGATTCTTCACTTGCAGTCTGTGCTCGAGAAGATGGATTTGGTAAA
GCTAGAGATTTATCTTCTTGTGGATCTGGAAAAAGAGTTAGAATCTCAAAAGATGGCAACTTTTGTGGTCCTTTTGCATTCAAGATGTGTTTTCCTCCTGGCTTTAGGCC
AAACACGAGTTACCTTGAACATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCCCGTACTTGAATGCGAGGAGATTTGATGTAGCTGATCCGAAGACAAGAAAGAGAGT
GGTCGCAGTTCTTCACGAGTTTCTAAGTTTGACAATGGAAAAAAGAATGACTTCAACACAATTGGATGCATTTCATAGGGAGTTTCTTCTACCATCTAAACTATTGCTTT
GTTTAGTAAAGCATCAAGGAATCTTCTACATCACTAATAAAGGTGCAAGGAGTACAGTATTTCTGAAAGAAGGCTATGAAGGGTCAACTTTGGTCGATAAATGTCCTTTG
CTGTTGCACTCTGATAGATTTCTTTCACTGTGTGGTAGGAGGGACGTGAGTTGCAATACACACCAAGTTAGTTTATAATCACATATTTATTGGAAAAAAATTGCATGAAA
AGTGAAAGGAAGCTTAATGCTCGTTGGATTTCCCAAGATATGAAGTAATGAACTTCGTTGTTGTAGTTTGGTGTTTTCGTACACCAATTAAAAGAAGGATGTAAAGAGAA
AATAGCAAGTATTCTTTTAAGTAATTTTACCGGGTAAATGTTAGGTTTGGTGTATACATTATAATATTTTTGGGAAAAATATGAGTTAGAGTTGGGATTTCCATCATCTA
AAGATATCTAAAGATATTTGAC
Protein sequenceShow/hide protein sequence
MNGKSMFLRLNRYPNSYPISETHVFDHKKSAFLWVLMRHKSSGGMRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQKWNFMAVIEKY
SSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVC
AREDGFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPSRT