CuGenDBv2

Gene ID	IVF0018001
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S16, chloroplastic
Genome location	chr12:18698649..18699779
RNA-Seq Expression	IVF0018001
Synteny	IVF0018001
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000307 - Ribosomal protein S16 IPR023803 - Ribosomal protein S16 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004286084.1 ribosomal protein S16 [Fragaria vesca subsp. vesca]

2.06e-26

64.29

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPIKNQIYLNVP IL+FL+KGAQPT TV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

YP_006883245.1 ribosomal protein S16 [Fragaria vesca subsp. bracteata]

2.06e-26

64.29

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPIKNQIYLNVP IL+FL+KGAQPT TV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

YP_009744559.1 ribosomal protein S16 [Potaninia mongolica]

1.41e-26

66.27

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Query:  MVKLCLKRCGSKQQIFI----------------KWVFYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ I+                 K  FYDPIKNQIYLNVP IL+FL+KGAQPT TV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFI----------------KWVFYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

YP_009751635.1 ribosomal protein S16 [Hodgsonia heteroclita]

1.79e-26

63.1

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + +                 FYDPIKNQ YLNVP IL+FL+KGAQPTETV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

YP_009751972.1 ribosomal protein S16 [Cionosicys macranthus]

1.79e-26

63.1

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + +                 FYDPIKNQ YLNVP IL+FL+KGAQPTETV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

TrEMBL top hits

e value

%identity

Alignment

A0A1V0IR61 Ribosomal protein S16

9.5e-19

66.27

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Query:  MVKLCLKRCGSKQQIF----------------IKWVFYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ I+                 K  FYDPIKNQIYLNVP IL+FL+KGAQPT TV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIF----------------IKWVFYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

A0A346QNZ6 30S ribosomal protein S16, chloroplastic

1.2e-18

63.1

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + +                 FYDPIKNQ YLNVP IL+FL+KGAQPTETV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

A0A6H0EPS6 30S ribosomal protein S16, chloroplastic

1.2e-18

63.1

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + +                 FYDPIKNQ YLNVP IL+FL+KGAQPTETV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

J9PXL6 Ribosomal protein S16

1.2e-18

64.29

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPIKNQIYLNVP IL+FL+KGAQPT TV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

K4ESM2 Ribosomal protein S16

1.2e-18

64.29

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPIKNQIYLNVP IL+FL+KGAQPT TV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

SwissProt top hits

e value

%identity

Alignment

A0ZZ17 30S ribosomal protein S16, chloroplastic

7.0e-19

60.71

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPI NQ YLNVP IL+FL+KGAQPT TV+DILKKAGVFTEL LNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

Q2L8Y7 30S ribosomal protein S16, chloroplastic

7.0e-19

60.71

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPI NQ YLNVP IL+FL+KGAQPT TV+DILKKAGVFTEL LNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

Q2MIB8 30S ribosomal protein S16, chloroplastic

2.0e-18

60.71

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPIKNQ YLNVP IL+FL+KGAQPTETV DILKKA VF EL LNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

Q2MIK5 30S ribosomal protein S16, chloroplastic

2.0e-18

60.71

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+   + V                 FYDPIKNQ YLNVP IL+FL+KGAQPTETV DILKKA VF EL LNQ
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

Q2QDA6 30S ribosomal protein S16, chloroplastic

2.8e-20

62.35

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Query:  MVKLCLKRCGSKQQIFI------------------KWVFYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ
        MVKL LKRCG KQ+  +                  K  FYDPIKNQ YLNVP IL+FL+KGAQPT TV+DILKKAGVFTELHLNQ
Subjt:  MVKLCLKRCGSKQQIFI------------------KWVFYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00050.1 ribosomal protein S16

1.1e-14

51.9

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Query:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTE
        MVKL LKRCG KQ+   + +                 FYDPI NQ +LN+  IL FLKKGAQPT T +DI KKAG+FTE
Subjt:  MVKLCLKRCGSKQQIFIKWV-----------------FYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTE

Sequences

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CDS sequence

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ATGGTAAAACTTTGTTTAAAACGATGTGGTAGTAAGCAACAGATCTTCATAAAGTGGGTTTTTTATGATCCAATAAAGAATCAAATCTATTTAAATGTTCCTACTATTCT
ACATTTCCTTAAAAAGGGTGCTCAACCTACAGAAACTGTTTATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCATCTTAATCAATAA

mRNA sequence

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Protein sequence

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MVKLCLKRCGSKQQIFIKWVFYDPIKNQIYLNVPTILHFLKKGAQPTETVYDILKKAGVFTELHLNQ

IVF0018001 (gene) of Melon (IVF77) v1 genome