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IVF0018006 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018006
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:21441891..21442423
RNA-Seq ExpressionIVF0018006
SyntenyIVF0018006
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032176.1 hypothetical protein E6C27_scaffold452G00990 [Cucumis melo var. makuwa]1.48e-2748.67Show/hide
Query:  MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE-------------------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS--
        M  +QEDLHLHLLKY A +KV++S ++Q R SSS      +CC  E                    E V+VSNMLQPR SSSQICCS++  RLKY+ +  
Subjt:  MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE-------------------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS--

Query:  ---------RMSSSQICCSRADRHLKYVAVEKAVVSNMLRSRRSLFLHML
                 R SSS ICCSR  R L YV  EK V SNML+ RRS FL+ML
Subjt:  ---------RMSSSQICCSRADRHLKYVAVEKAVVSNMLRSRRSLFLHML

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]1.81e-2148.12Show/hide
Query:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM
        +LKY A EK+++SN++Q RRSSS      +CCS +         EKVVVS +LQPRMSSSQICC RE   LKYV +                      R 
Subjt:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM

Query:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS
        SSSQICCS+ D  LKY+  EK VVS ML+ RRS
Subjt:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS

KAA0065363.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.37e-3666.94Show/hide
Query:  SQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSSS
         +EDLHLHLLKYDA EKV+ISNVVQSRRSSSSSS SHM CS +         EK VVSNMLQPRMSS QICC+RE HRLKYV            SRMS S
Subjt:  SQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSSS

Query:  QICCSRADRHLKYVAVEKAVV
        QICCSR  R LKY+A EK VV
Subjt:  QICCSRADRHLKYVAVEKAVV

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]3.10e-2955.73Show/hide
Query:  FSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSS
        + QE  HL   KY A+EKVV+SN++Q RRSS       +CCS E        VEK+VVSNMLQ RMSSS ICCS+E  RLKYV            SR+SS
Subjt:  FSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSS

Query:  SQICCSRADRHLKYVAVEKAVVSNMLRSRRS
        SQICCS+  R LKY  VEK VVSNML+SRR+
Subjt:  SQICCSRADRHLKYVAVEKAVVSNMLRSRRS

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.75e-2148.12Show/hide
Query:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM
        +LKY A EK+++SN++Q RRSSS      +CCS +         EKVVVS +LQPRMSSSQICC RE   LKYV +                      R 
Subjt:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM

Query:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS
        SSSQICCS+ D  LKY+  EK VVS ML+ RRS
Subjt:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS

TrEMBL top hitse value%identityAlignment
A0A5A7SQ83 Uncharacterized protein1.3e-2148.67Show/hide
Query:  MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE-------------------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS--
        M  +QEDLHLHLLKY A +KV++S ++Q R      SSS +CC  E                    E V+VSNMLQPR SSSQICCS++  RLKY+ +  
Subjt:  MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE-------------------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS--

Query:  ---------RMSSSQICCSRADRHLKYVAVEKAVVSNMLRSRRSLFLHML
                 R SSS ICCSR  R L YV  EK V SNML+ RRS FL+ML
Subjt:  ---------RMSSSQICCSRADRHLKYVAVEKAVVSNMLRSRRSLFLHML

A0A5A7UEK9 Uncharacterized protein3.4e-1748.12Show/hide
Query:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM
        +LKY A EK+++SN++Q RR     SSS +CCS +         EKVVVS +LQPRMSSSQICC RE   LKYV +                      R 
Subjt:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM

Query:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS
        SSSQICCS+ D  LKY+  EK VVS ML+ RRS
Subjt:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS

A0A5A7VE10 Uncharacterized protein6.0e-2255.73Show/hide
Query:  FSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSS
        + QE  H   LKY A+EKVV+SN++Q RR     SS  +CCS E        VEK+VVSNMLQ RMSSS ICCS+E  RLKYV            SR+SS
Subjt:  FSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSS

Query:  SQICCSRADRHLKYVAVEKAVVSNMLRSRRS
        SQICCS+  R LKY  VEK VVSNML+SRR+
Subjt:  SQICCSRADRHLKYVAVEKAVVSNMLRSRRS

A0A5D3C2C8 Retrotransposon gag protein3.4e-1748.12Show/hide
Query:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM
        +LKY A EK+++SN++Q RR     SSS +CCS +         EKVVVS +LQPRMSSSQICC RE   LKYV +                      R 
Subjt:  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS----------------------RM

Query:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS
        SSSQICCS+ D  LKY+  EK VVS ML+ RRS
Subjt:  SSSQICCSRADRHLKYVAVEKAVVSNMLRSRRS

A0A5D3DBL7 Retrotransposon gag protein8.6e-2959.71Show/hide
Query:  QEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSSSQ
        +EDLHLHLLKYDA EKV+ISNVVQSRRSSSSSS SHM CS +         EK VVSNMLQPRMSS QICC+RE HRLKYV            SRMS SQ
Subjt:  QEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSSQICCSRESHRLKYVT-----------SRMSSSQ

Query:  ICCSRADRHLKYVAVEKAVVSNMLRSRRSLFLHMLWSKR
        ICCSR  R LKY+A EK VV   +  ++ + L  +  K+
Subjt:  ICCSRADRHLKYVAVEKAVVSNMLRSRRSLFLHMLWSKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTTCAGCCAAGAGGATCTTCATCTTCATCTTCTCAAATATGATGCAATCGAGAAGGTCGTCATCTCAAATGTGGTGCAGTCGAGACGATCATCATCTTCATCTTC
ATCTTCTCACATGTGTTGTAGCCCAGAGGTCGAGAAAGTTGTCGTCTCAAATATGTTACAGCCGAGAATGTCATCATCTCAAATATGTTGCAGTCGAGAAAGTCATCGTC
TCAAATATGTTACATCGAGAATGTCGTCGTCTCAAATATGTTGTAGTCGAGCAGATCGTCATCTCAAATATGTTGCAGTTGAGAAGGCAGTCGTCTCAAATATGTTGCGA
TCGAGAAGATCTTTGTTCTTACATATGTTATGGTCGAAAAGATCGTCGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTTCAGCCAAGAGGATCTTCATCTTCATCTTCTCAAATATGATGCAATCGAGAAGGTCGTCATCTCAAATGTGGTGCAGTCGAGACGATCATCATCTTCATCTTC
ATCTTCTCACATGTGTTGTAGCCCAGAGGTCGAGAAAGTTGTCGTCTCAAATATGTTACAGCCGAGAATGTCATCATCTCAAATATGTTGCAGTCGAGAAAGTCATCGTC
TCAAATATGTTACATCGAGAATGTCGTCGTCTCAAATATGTTGTAGTCGAGCAGATCGTCATCTCAAATATGTTGCAGTTGAGAAGGCAGTCGTCTCAAATATGTTGCGA
TCGAGAAGATCTTTGTTCTTACATATGTTATGGTCGAAAAGATCGTCGTCTTAA
Protein sequenceShow/hide protein sequence
MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPEVEKVVVSNMLQPRMSSSQICCSRESHRLKYVTSRMSSSQICCSRADRHLKYVAVEKAVVSNMLR
SRRSLFLHMLWSKRSSS