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IVF0018033 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018033
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:24952757..24953215
RNA-Seq ExpressionIVF0018033
SyntenyIVF0018033
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025375.1 zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa]2.58e-7784.21Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR S QICCSQKDFCLKYIV EKVVVSYILQPRMSSSQIC  R   PLKYVAAEKIVVLKYV  EKI+VSNMLQPRRSS +ICCSQKDFCLKYIVA
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSY+LQPR+S S IC  R GRPLKYVAA+KIVVLKYV A+KI+VSNML
Subjt:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]8.22e-8288.16Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR SSQICCSQKDFC +YI+ EKVVVSYILQPRMSSSQIC  RE RPLKYVAAEKI VLKYV  EKIIVSNMLQPRRSSSQICCSQK FCLKYIV 
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSYMLQPR+SLS ICC REGRPLKYVAAKKI+V KYVAAKKIIVSNML
Subjt:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

KAA0035317.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.85e-8484.97Show/hide
Query:  MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQP
        MLQ R  SS I CS                     QKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQP
Subjt:  MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQP

Query:  RRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        RRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Subjt:  RRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]7.17e-8075Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI+VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPR--------------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSYMLQPR                                +S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIVSNML
Subjt:  EKVVVSYMLQPR--------------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.11e-7575Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI+VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPR--------------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSYMLQPR                                +S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIVSNML
Subjt:  EKVVVSYMLQPR--------------------------------ISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

TrEMBL top hitse value%identityAlignment
A0A5A7SLN4 Zinc finger Y-chromosomal protein 1-like isoform X11.0e-6084.21Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR S QICCSQKDFCLKYIV EKVVVSYILQPRMSSSQIC  R   PLKYVAAEKIVVLKYV  EKI+VSNMLQPRRSS +ICCSQKDFCLKYIVA
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSY+LQPR+S S IC  R GRPLKYVAA+KIVVLKYV A+KI+VSNML
Subjt:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

A0A5A7SNS6 Uncharacterized protein1.5e-6488.16Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR SSQICCSQKDFC +YI+ EKVVVSYILQPRMSSSQIC  RE RPLKYVAAEKI VLKYV  EKIIVSNMLQPRRSSSQICCSQK FCLKYIV 
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSYMLQPR+SLS ICC REGRPLKYVAAKKI+V KYVAAKKIIVSNML
Subjt:  EKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

A0A5A7T146 Retrotransposon gag protein3.0e-6884.97Show/hide
Query:  MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQP
        MLQ R  SS I CS                     QKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQP
Subjt:  MLQPRRLSSQICCS---------------------QKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQP

Query:  RRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        RRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Subjt:  RRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

A0A5A7UEK9 Uncharacterized protein1.3e-6375Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI+VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQ--------------------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSYMLQ                                PR+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIVSNML
Subjt:  EKVVVSYMLQ--------------------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

A0A5D3C2C8 Retrotransposon gag protein1.3e-6375Show/hide
Query:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
        MLQPRR SSQICCSQKDFCLKYIV EKVVVSYILQPRMSSSQICC RE RPLKYVA EKI+VLKYV  EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA
Subjt:  MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVA

Query:  EKVVVSYMLQ--------------------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        EKVVVSYMLQ                                PR+S S ICC REGRPLKY+AAKKIVVLKYVAA+KIIVSNML
Subjt:  EKVVVSYMLQ--------------------------------PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCT
CAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAG
CCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCAT
CGTCTCAAATATGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGTCGAGAAAGTTGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCGTCTCAAATATGTTGCCTTCGAGAAGATCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGTAGTAGAGAAGATCATCGTCT
CAAACATGTTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAG
CCGAGGATTTCTTTGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCAT
CGTCTCAAATATGTTGTAG
Protein sequenceShow/hide protein sequence
MLQPRRLSSQICCSQKDFCLKYIVVEKVVVSYILQPRMSSSQICCLREDRPLKYVAAEKIVVLKYVVVEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ
PRISLSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML