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IVF0018065 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018065
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein LOL2
Genome locationchr12:21224013..21227029
RNA-Seq ExpressionIVF0018065
SyntenyIVF0018065
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]5.78e-8896.21Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS +DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_008442535.1 PREDICTED: protein LOL2 isoform X3 [Cucumis melo]8.16e-95100Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]2.18e-9299.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]6.22e-9096.97Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS ADMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]1.04e-8190.15Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        M++HEIEKDEDDGPPPGWEPITP LP PP   LS +DMAQMVCGTCRRLLKYLKGARYVQCS CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein2.9e-6796.21Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS +DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A1S3B6K2 protein LOL2 isoform X31.7e-72100Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A1S3B6Q2 protein LOL2 isoform X41.2e-7099.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A5A7UQS3 Protein LOL2 isoform X41.2e-7099.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSP DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A5D3DST5 Protein LOL2 isoform X31.7e-72100Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL28.1e-3556.35Show/hide
Query:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQP-QLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQP-QLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG

P94077 Protein LSD14.0e-1842.48Show/hide
Query:  LPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW
        +PP P   P DMA ++CG CR +L Y +GA  V+CS C T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P 
Subjt:  LPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW

Query:  SVQQ--GQAAPPT
           +  G A PP+
Subjt:  SVQQ--GQAAPPT

Q0J7V9 Protein LSD14.8e-1956.16Show/hide
Query:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        +MAQ+VCG C  LL Y++GA  VQCS C TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Q704V3 Protein LOL52.4e-2654.72Show/hide
Query:  PGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRP
        P  +   P +P PP P L+  ++ QMVCG+CR LL Y +GA YV C+ C T+N+VLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R 
Subjt:  PGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRP

Query:  PWSVQQ
          S++Q
Subjt:  PWSVQQ

Q93ZB1 Protein LOL12.8e-1957.53Show/hide
Query:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 12.0e-2057.53Show/hide
Query:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 12.0e-2057.53Show/hide
Query:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 12.0e-2057.53Show/hide
Query:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        +MAQ+VCG C  LL Y++GA  VQCS C TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein2.9e-1942.48Show/hide
Query:  LPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW
        +PP P   P DMA ++CG CR +L Y +GA  V+CS C T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P 
Subjt:  LPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW

Query:  SVQQ--GQAAPPT
           +  G A PP+
Subjt:  SVQQ--GQAAPPT

AT4G21610.1 lsd one like 25.7e-3656.35Show/hide
Query:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQP-QLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEP-------ITPSLPLPPQP-QLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCATCCTTGCCTCTACCGCCGCAGCCGCAACTTTCTCCAGCTGA
CATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGGTGTTCAACAGTTAACTTTGTGTTAGAAGCTC
ACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCGGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGATGTTCTTCGTGTACCAGTGTGACAGAAATTGGGGTT
CATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTTCAATAG
mRNA sequenceShow/hide mRNA sequence
AGATATTAAACCTAAAATGGCATAAGGGGAGAATTGAGAAGTTAGGGAGCCAAAGCGCGGGACGCCGTTGTCCATGGAAACAACAACATGACCGATTCTTAAGGCGACAG
ATCGAGAGAATGGATGTCCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCATCCTTGCCTCTACCGCCGCAGCCGCAACTTTC
TCCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGGTGTTCAACAGTTAACTTTGTGT
TAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCGGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGATGTTCTTCGTGTACCAGTGTGACAGAA
ATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTTCAATAGAATTTGTTTTTCTGAGTTTCATTTAGGAAAAG
ATGTTCCATTTTCTGAGTTTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAAAGAAAAGAGAAAACTATCAATCATTAGTGCCACTTTTATTTCCTTATTATTAG
CTATTGAGTTTATGTAAAGAAACTTAGGAACTCACCTTCTTAACTTCCAACATTTTTTTTTTATCTTAAGTTTTTTGACTTGTGACTTGACTTGTTGCTTTGTGTTCATT
TTTTTAATGCTGCTGATTGGAGCCCTTATTAGTTGCTGCCAATCTCTGGGGTGTACTTAATTGTAATTTGTAAATGGTATGAATCTTTTTTATTGTCAAATTGTTGAGGT
ATAATTTATTGAGATGAACCGTCTAAAT
Protein sequenceShow/hide protein sequence
MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGV
HNRRPPWSVQQGQAAPPTNFVQ