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IVF0018074 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018074
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr09:16835196..16835438
RNA-Seq ExpressionIVF0018074
SyntenyIVF0018074
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025761.1 gag/pol protein [Cucumis melo var. makuwa]1.23e-3882.5Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN
        M KGKEMEANV TTEKKLVGGSSSKTRVG   ++KKRK  TPK SEGKKVAKGKCY C+ED HWLRNCPKYLAEK+AQGN
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN

KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]1.21e-3576.92Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ
        M KGKE+EAN+ T EK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNE+ HWLRNCPKYLAEK+A+
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ

KAA0050233.1 gag/pol protein [Cucumis melo var. makuwa]8.39e-49100Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN
        MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN

KAA0051354.1 gag/pol protein [Cucumis melo var. makuwa]1.15e-3579.49Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ
        M KGKE+EAN  TTEK+LVGGSSSKTRVG   ++KKRKG TPK SEGKKVAKGKC  CNEDEHWLRNCPKYLAEK+A+
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]1.48e-3678.21Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ
        M KGKE+EAN+ TTEK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNED HWLRNCP+YLAEK+A+
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ

TrEMBL top hitse value%identityAlignment
A0A5A7SND1 Gag/pol protein1.7e-2782.5Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN
        M KGKEMEANV TTEKKLVGGSSSKTRVG   ++KKRK  TPK SEGKKVAKGKCY C+ED HWLRNCPKYLAEK+AQGN
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN

A0A5A7T0L9 Gag/pol protein9.6e-2676.92Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ
        M KGKE+EAN+ T EK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNE+ HWLRNCPKYLAEK+A+
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ

A0A5A7U2U6 Gag/pol protein2.1e-36100Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN
        MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN

A0A5A7U7R6 Gag/pol protein3.6e-2579.49Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ
        M KGKE+EAN  TTEK+LVGGSSSKTRVG   ++KKRKG TPK SEGKKVAKGKC  CNEDEHWLRNCPKYLAEK+A+
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ

A0A5D3E1U5 Gag/pol protein1.9e-2678.21Show/hide
Query:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ
        M KGKE+EAN+ TTEK+LVGGSSSKTRVGPS ++KK KG TPK S+GKKVAKGKCY CNED HWLRNCP+YLAEK+A+
Subjt:  MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAGGGAAAGGAAATGGAAGCAAATGTTACTACCACAGAGAAAAAATTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACTTGTAGAAAAGAAGAG
AAAGGGGAATACTCCTAAGAAAAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCGCTGCAACGAGGATGAACATTGGTTGAGAAATTGCCCAAAGTACCTTGCTG
AGAAGGAAGCACAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAGGGAAAGGAAATGGAAGCAAATGTTACTACCACAGAGAAAAAATTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACTTGTAGAAAAGAAGAG
AAAGGGGAATACTCCTAAGAAAAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCGCTGCAACGAGGATGAACATTGGTTGAGAAATTGCCCAAAGTACCTTGCTG
AGAAGGAAGCACAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MSKGKEMEANVTTTEKKLVGGSSSKTRVGPSLVEKKRKGNTPKKSEGKKVAKGKCYRCNEDEHWLRNCPKYLAEKEAQGN