; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0018088 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018088
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptiontRNA ligase 1
Genome locationchr12:4596303..4597648
RNA-Seq ExpressionIVF0018088
SyntenyIVF0018088
Gene Ontology termsGO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003972 - RNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR038837 - tRNA ligase 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059482.1 uncharacterized protein E6C27_scaffold242G002130 [Cucumis melo var. makuwa]2.47e-8157.97Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP--------------------------------------------------------------
        MSALQRIFY KILP PPFSSSY+VFPFICHPLSHFILP                                                              
Subjt:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP--------------------------------------------------------------

Query:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS
                                +QKWKEKA+VD+SPTESEAA EVVT+ALGKLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTS
Subjt:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS

Query:  GAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
        GAAVIEGEKA TNGTSTENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS YT  +IRATFYPKFENEKSDQE+
Subjt:  GAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV

TYJ97079.1 hypothetical protein E5676_scaffold75204G00010 [Cucumis melo var. makuwa]1.09e-7184.29Show/hide
Query:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLS
        +QKWKEKAEVDRSPTESEAAAE                  LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEK PTNGT+TENKGSNAGLAVQGGVVGLS
Subjt:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLS

Query:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
        QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQE+
Subjt:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV

XP_004147268.2 tRNA ligase 1 isoform X1 [Cucumis sativus]9.97e-8168.16Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIF  K LP PPFSSSYRVFPFI HPLSH+ILP                                 +QKWKEKA+ DR+ TESEAAAEVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQ              LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTN TSTENKGSNAG+A Q GVV LSQL KSNQIEKF VDNS 
Subjt:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEV
        YT  +IRATFYPKFENEKSDQE+
Subjt:  YTHEEIRATFYPKFENEKSDQEV

XP_008463605.1 PREDICTED: uncharacterized protein LOC103501711 isoform X1 [Cucumis melo]5.07e-8871.75Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIFY KILP PPFSSSY+VFPFICHPLSHFILP                                 +QKWKEKA+VD+SPTESEAA EVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTSGAAVIEGEKA TNGTSTENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS 
Subjt:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEV
        YT  +IRATFYPKFENEKSDQE+
Subjt:  YTHEEIRATFYPKFENEKSDQEV

XP_038894223.1 tRNA ligase 1 isoform X1 [Benincasa hispida]6.39e-7463Show/hide
Query:  MSALQRIFYTKILPRP----PFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVT
        MSA QRIF    LP P    P + +YR FPFICHPLSHFILP                                 +QKWKEKA+VDR+ TESEAAAEVVT
Subjt:  MSALQRIFYTKILPRP----PFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVT

Query:  SALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIV
        +ALGKLRVTE+DQ              LTNQ TPGLAHRA+WKPKAYGTTSGAA +EGEKAPTNGTSTENKGSNA LA Q G VGLSQL K NQIEKF V
Subjt:  SALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIV

Query:  DNSAYTHEEIRATFYPKFENEKSDQEV
        DNS YT  +IRATFYPKFENEKSDQE+
Subjt:  DNSAYTHEEIRATFYPKFENEKSDQEV

TrEMBL top hitse value%identityAlignment
A0A0A0LVA8 Uncharacterized protein1.5e-8469.8Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIF  K LP PPFSSSYRVFPFI HPLSH+ILP                                 +QKWKEKA+ DR+ TESEAAAEVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQ------------SFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQ            + LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTN TSTENKGSNAG+A Q GVV LSQL KSNQIEKF VDNS 
Subjt:  KLRVTESDQ------------SFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEVHACSCVHVCESLDYHLWVIGQILLQLLGQWCF
        YT  +IRATFYPKFENEKSDQEVHACSCV V ESL+YHLWVIGQILLQL G   F
Subjt:  YTHEEIRATFYPKFENEKSDQEVHACSCVHVCESLDYHLWVIGQILLQLLGQWCF

A0A1S3CK49 uncharacterized protein LOC103501711 isoform X19.5e-7671.75Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG
        MSALQRIFY KILP PPFSSSY+VFPFICHPLSHFILP                                 +QKWKEKA+VD+SPTESEAA EVVT+ALG
Subjt:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP---------------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALG

Query:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA
        KLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTSGAAVIEGEKA TNGTSTENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS 
Subjt:  KLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSA

Query:  YTHEEIRATFYPKFENEKSDQEV
        YT  +IRATFYPKFENEKSDQE+
Subjt:  YTHEEIRATFYPKFENEKSDQEV

A0A1S3CL84 uncharacterized protein LOC103501711 isoform X21.4e-5882.24Show/hide
Query:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNA
        +QKWKEKA+VD+SPTESEAA EVVT+ALGKLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTSGAAVIEGEKA TNGTSTENKGSNA
Subjt:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNA

Query:  GLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
        GLAVQGG VGLSQL KSNQIEKFIVDNS YT  +IRATFYPKFENEKSDQE+
Subjt:  GLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV

A0A5A7U7P6 Uncharacterized protein1.7e-5685.71Show/hide
Query:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLS
        +QKWKEKAEVDRSPTESEAAAE                  LTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLS
Subjt:  QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLS

Query:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
        QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQE+
Subjt:  QLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV

A0A5A7UUA9 Uncharacterized protein1.3e-6957.97Show/hide
Query:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP--------------------------------------------------------------
        MSALQRIFY KILP PPFSSSY+VFPFICHPLSHFILP                                                              
Subjt:  MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILP--------------------------------------------------------------

Query:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS
                                +QKWKEKA+VD+SPTESEAA EVVT+ALGKLRVTESDQS             LTNQA PGLAHRAIWKPKAYGTTS
Subjt:  ------------------------QQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSF------------LTNQATPGLAHRAIWKPKAYGTTS

Query:  GAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
        GAAVIEGEKA TNGTSTENKGSNAGLAVQGG VGLSQL KSNQIEKFIVDNS YT  +IRATFYPKFENEKSDQE+
Subjt:  GAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV

SwissProt top hitse value%identityAlignment
Q0WL81 tRNA ligase 11.0e-1338.41Show/hide
Query:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQL
        A  +   + +   AE V +  G L + ES+ +   L +Q T    HR    +WKPK+YGT SG++           TS  ++  ++G    G  + LS++
Subjt:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQL

Query:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
           N +EKF VD S Y H +IRATFYPKFENEK+DQE+
Subjt:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV

Arabidopsis top hitse value%identityAlignment
AT1G07910.1 RNAligase7.1e-1538.41Show/hide
Query:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQL
        A  +   + +   AE V +  G L + ES+ +   L +Q T    HR    +WKPK+YGT SG++           TS  ++  ++G    G  + LS++
Subjt:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQL

Query:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
           N +EKF VD S Y H +IRATFYPKFENEK+DQE+
Subjt:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV

AT1G07910.2 RNAligase7.1e-1538.41Show/hide
Query:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQL
        A  +   + +   AE V +  G L + ES+ +   L +Q T    HR    +WKPK+YGT SG++           TS  ++  ++G    G  + LS++
Subjt:  AEVDRSPTESEAAAEVVTSALGKLRVTESDQS--FLTNQATPGLAHRA---IWKPKAYGTTSGAAVIEGEKAPTNGTSTENKGSNAGLAVQGGVVGLSQL

Query:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV
           N +EKF VD S Y H +IRATFYPKFENEK+DQE+
Subjt:  CKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGTTGCAGAGAATTTTCTATACTAAAATTCTTCCTCGCCCTCCTTTTTCTTCGTCTTACAGGGTCTTCCCCTTCATTTGCCACCCTCTTTCCCACTTTATCTT
ACCACAACAGAAGTGGAAAGAGAAGGCAGAGGTTGACAGAAGTCCTACAGAGTCAGAGGCTGCAGCGGAAGTTGTTACTAGTGCACTCGGTAAATTGAGGGTCACTGAAA
GTGATCAATCTTTTCTGACAAATCAGGCCACCCCTGGACTTGCTCATAGAGCAATTTGGAAACCAAAAGCGTATGGAACAACCAGTGGGGCTGCAGTGATTGAAGGTGAA
AAAGCACCTACCAATGGAACGTCAACTGAAAACAAAGGGAGTAATGCTGGACTGGCAGTACAGGGCGGTGTCGTTGGCTTGAGTCAATTATGCAAGAGCAATCAGATTGA
AAAATTTATTGTGGATAACTCCGCTTACACACATGAGGAAATAAGAGCAACGTTCTACCCAAAATTTGAGAATGAGAAGTCGGATCAGGAGGTGCATGCTTGTAGTTGTG
TACATGTTTGTGAATCTCTTGACTATCACCTTTGGGTCATTGGGCAAATTTTGCTGCAGCTTTTGGGTCAATGGTGTTTCTTTAAAATACAGGTTCCCAAGGTTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGTTGCAGAGAATTTTCTATACTAAAATTCTTCCTCGCCCTCCTTTTTCTTCGTCTTACAGGGTCTTCCCCTTCATTTGCCACCCTCTTTCCCACTTTATCTT
ACCACAACAGAAGTGGAAAGAGAAGGCAGAGGTTGACAGAAGTCCTACAGAGTCAGAGGCTGCAGCGGAAGTTGTTACTAGTGCACTCGGTAAATTGAGGGTCACTGAAA
GTGATCAATCTTTTCTGACAAATCAGGCCACCCCTGGACTTGCTCATAGAGCAATTTGGAAACCAAAAGCGTATGGAACAACCAGTGGGGCTGCAGTGATTGAAGGTGAA
AAAGCACCTACCAATGGAACGTCAACTGAAAACAAAGGGAGTAATGCTGGACTGGCAGTACAGGGCGGTGTCGTTGGCTTGAGTCAATTATGCAAGAGCAATCAGATTGA
AAAATTTATTGTGGATAACTCCGCTTACACACATGAGGAAATAAGAGCAACGTTCTACCCAAAATTTGAGAATGAGAAGTCGGATCAGGAGGTGCATGCTTGTAGTTGTG
TACATGTTTGTGAATCTCTTGACTATCACCTTTGGGTCATTGGGCAAATTTTGCTGCAGCTTTTGGGTCAATGGTGTTTCTTTAAAATACAGGTTCCCAAGGTTTTTTAA
Protein sequenceShow/hide protein sequence
MSALQRIFYTKILPRPPFSSSYRVFPFICHPLSHFILPQQKWKEKAEVDRSPTESEAAAEVVTSALGKLRVTESDQSFLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGE
KAPTNGTSTENKGSNAGLAVQGGVVGLSQLCKSNQIEKFIVDNSAYTHEEIRATFYPKFENEKSDQEVHACSCVHVCESLDYHLWVIGQILLQLLGQWCFFKIQVPKVF