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IVF0018123 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0018123
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Genome locationchr02:13722020..13723237
RNA-Seq ExpressionIVF0018123
SyntenyIVF0018123
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041618.1 hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa]1.22e-9082.39Show/hide
Query:  MQLYHDALLIPRRL----------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSG
        MQLYHDALL+PRRL                      RNQPREDGLSLIVEK WAGAFADHWPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEAPNSG
Subjt:  MQLYHDALLIPRRL----------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSG

Query:  RALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        RALTLGQRLIEGQTRWGT+TKVPGEF FTDCYWEWL+LVVGRNTRLLYST LY  VTASLYTYDRNSDVVRAFCEA
Subjt:  RALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

KAA0047222.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.07e-9173.16Show/hide
Query:  MQLYHDALLIPRRL------------------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAW
        MQLYHDALL+PRRL                                    RNQP+EDGLSLIVEKPWA AFADHWPRLDNNSVL RLSVE+PLSEGKSA 
Subjt:  MQLYHDALLIPRRL------------------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAW

Query:  VLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        VLQSSIHNEA NS RALTLGQRLIEGQTRWGT+TK+PGEF F DCYWEWL+LVVGRNTRLLYSTRLYGA+T SLYTYDRNSDVVRAFCEA
Subjt:  VLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]1.26e-8897.14Show/hide
Query:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL
        RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGT+TKVPGEF FTDCYWEWL
Subjt:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL

Query:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        +LVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
Subjt:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

KAA0058006.1 uncharacterized protein E6C27_scaffold274G003110 [Cucumis melo var. makuwa]9.72e-9679.56Show/hide
Query:  MQLYHDALLIPRRL---------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNE
        MQLYHDALL+PRRL                           +NQPREDGLSLIVEKPWA AFADHWPRLDNNSVL RLSVE+PLSEGKSAWVLQSSIHNE
Subjt:  MQLYHDALLIPRRL---------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNE

Query:  APNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        APNSGRALTLGQRLIEGQTRWGT+TKVPGEF+FTDCYWEWL+LVVGRNTRLLYSTRLYG VTASLYTYDRNSDVVR FCEA
Subjt:  APNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

KAA0061098.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.63e-9090.71Show/hide
Query:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL
        RNQ REDGLSLIVEKPWAG FADHWPRLDNNSVL RLSVE+PLSEGKSAWVLQS IH+EAPNSGRALT GQRLIEGQT WGT+TKVPGEF FTDCYWEWL
Subjt:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL

Query:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        +LVVGRNTRLLYST LYGAVTASLYTYDRN+DVVRAFCEA
Subjt:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

TrEMBL top hitse value%identityAlignment
A0A5A7TFC8 PMD domain-containing protein2.3e-7682.39Show/hide
Query:  MQLYHDALLIPRRL----------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSG
        MQLYHDALL+PRRL                      RNQPREDGLSLIVEK WAGAFADHWPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEAPNSG
Subjt:  MQLYHDALLIPRRL----------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSG

Query:  RALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        RALTLGQRLIEGQTRWGT+TKVPGEF FTDCYWEWL+LVVGRNTRLLYST LY  VTASLYTYDRNSDVVRAFCEA
Subjt:  RALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

A0A5A7TX42 Uncharacterized protein5.7e-7597.14Show/hide
Query:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL
        RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVL RLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGT+TKVPGEF FTDCYWEWL
Subjt:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL

Query:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        +LVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
Subjt:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

A0A5A7UV18 Uncharacterized protein6.1e-7779.56Show/hide
Query:  MQLYHDALLIPRRL---------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNE
        MQLYHDALL+PRRL                           +NQPREDGLSLIVEKPWA AFADHWPRLDNNSVL RLSVE+PLSEGKSAWVLQSSIHNE
Subjt:  MQLYHDALLIPRRL---------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNE

Query:  APNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        APNSGRALTLGQRLIEGQTRWGT+TKVPGEF+FTDCYWEWL+LVVGRNTRLLYSTRLYG VTASLYTYDRNSDVVR FCEA
Subjt:  APNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

A0A5A7VHW8 PMD domain-containing protein3.1e-7394.29Show/hide
Query:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL
        RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVL RLSVE+PLSEGKSAW+LQSSIH+EAPNSGRALTLGQRLIEGQTRWGT+TKVP EF FTDCYWEWL
Subjt:  RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWL

Query:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
        +LVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA
Subjt:  DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA

A0A5D3C3D7 PMD domain-containing protein2.8e-7475.92Show/hide
Query:  MQLYHDALLIPRRL--------------------------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVP
        MQLYHD LLIPRRL                                            RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVP
Subjt:  MQLYHDALLIPRRL--------------------------------------------RNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVP

Query:  LSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDV
        LSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGT+TKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDV
Subjt:  LSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCYWEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTCTATCATGACGCCCTATTGATTCCTCGACGCCTGAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGGCGCTTTTGCAGA
TCATTGGCCACGCTTAGACAACAACTCAGTTCTTCTTAGATTATCCGTGGAGGTACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGG
CTCCTAATTCTGGCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTATAACCAAGGTCCCTGGAGAGTTTTTCTTTACTGACTGTTAT
TGGGAGTGGTTGGATCTTGTAGTTGGTCGAAATACACGACTTCTTTACAGTACTCGTTTATATGGCGCCGTAACAGCTTCTTTGTACACTTATGATCGCAACAGTGATGT
TGTTAGAGCATTTTGTGAAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACTCTATCATGACGCCCTATTGATTCCTCGACGCCTGAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGGCGCTTTTGCAGA
TCATTGGCCACGCTTAGACAACAACTCAGTTCTTCTTAGATTATCCGTGGAGGTACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGG
CTCCTAATTCTGGCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTATAACCAAGGTCCCTGGAGAGTTTTTCTTTACTGACTGTTAT
TGGGAGTGGTTGGATCTTGTAGTTGGTCGAAATACACGACTTCTTTACAGTACTCGTTTATATGGCGCCGTAACAGCTTCTTTGTACACTTATGATCGCAACAGTGATGT
TGTTAGAGCATTTTGTGAAGCATGA
Protein sequenceShow/hide protein sequence
MQLYHDALLIPRRLRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTITKVPGEFFFTDCY
WEWLDLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEA