CuGenDBv2

Gene ID	IVF0018176
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S6
Genome location	chr06:22235308..22240031
RNA-Seq Expression	IVF0018176
Synteny	IVF0018176
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008449133.1 PREDICTED: 30S ribosomal protein S6 [Cucumis melo]

6.37e-99

100

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

XP_011650517.1 uncharacterized protein LOC101218568 [Cucumis sativus]

2.17e-86

89.54

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGD--EDDDDDDDDDDDEEYDVEQEDTKAE
        +GLEFL EDDDK+G  + SRLNLMGD  ED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGD--EDDDDDDDDDDDEEYDVEQEDTKAE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

3.56e-78

82.89

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K    +F R+ +MGD+D D++DDDDD+DEEYDVEQE++K E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

5.23e-78

85.14

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDD--DDDDDDDDEEYDVEQE
        YGLEFLSEDD K+   +F R N++GD+D D  DDDDDDDDEEYDVEQE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDD--DDDDDDDDEEYDVEQE

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]

1.55e-77

81.82

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKL+GRYYQGQLMQMTMMATPN+NKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDD---DDDDDDEEYDVEQEDTKAE
        YGLEFLSE+D KS  G+F RL+++ D+D+D+D   DDD+DDEEY+VEQE  +AE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDD---DDDDDDEEYDVEQEDTKAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X6 Uncharacterized protein

6.2e-66

89.54

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMG--DEDDDDDDDDDDDEEYDVEQEDTKAE
        +GLEFL EDDDK+G  + SRLNLMG  DED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMG--DEDDDDDDDDDDDEEYDVEQEDTKAE

A0A1S3BLC8 30S ribosomal protein S6

1.9e-75

100

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

A0A6J1CN79 uncharacterized protein LOC111013137

1.1e-59

82.89

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K    +F R+ +MGD+D D++DDDDD+DEEYDVEQE++K E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDED-DDDDDDDDDDEEYDVEQEDTKAE

A0A6J1FEF6 uncharacterized protein LOC111443208

9.5e-59

81.7

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDE--DDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K+   +F R  ++GD+  D++DDDDDDDDEEYDVEQE+   E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDE--DDDDDDDDDDDEEYDVEQEDTKAE

A0A6J1KXT7 uncharacterized protein LOC111498530

4.4e-56

79.47

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLLMKPHV+KEALLDLVARVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE
        YGLEFLSEDD K+   +F R +++GD+D D++DDDDDD+  DVEQE  + E
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.6e-40

61.48

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLL KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD
         G     ++D  + P + +  +L      D+DD++
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.1e-35

57.78

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Query:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD MLL KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD
         G     ++D  + P + +  +L      D+DD++
Subjt:  YGLEFLSEDDDKSGPGQFSRLNLMGDEDDDDDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATGTTATGCTTTTGATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAACGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATACTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ACATGAACAAGGAGTTGTTTTACTTAAACAAGGAAGATCGATTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATATGGCCTGGAATTCCTTAGTGAAGATGAT
GACAAGAGTGGACCTGGCCAATTTAGTCGACTTAACTTGATGGGTGATGAAGATGATGATGACGACGACGACGATGACGACGATGAAGAATACGACGTGGAACAAGAAGA
TACAAAAGCAGAGTGA

mRNA sequence

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GGGGGATTGAACCTAAAGGAGAAAACCATTTTTCCATAAACCCTATTTCACCTTCAGCCACACACCCTCCCACTAATAGCCACTGCATCCCGCCCGGAAACACGCCGCTC
GTGCCCGACACAGTATCAGCGGCGGCCGCTATATGCTGCACTCTTATCTGCCGGATTCTCATCTTTCGGACGAACTCGACGCCTCTCCCTCCCTCTCACACTCTCTCGCT
TCTCCAAGCAATCGGAGCTACTTATCTCCGTTGTTGTTATCTCAGAAATAGAAACAGTGGTTCAGCCCCCCTGTTGGTGAGATCCTACCGTCCCTCACGCCTACTGCCGC
TCATTTTTTAAATTCCAAGGAGTTAAGTGAAGGAAACGGCGCAGGCTGCCATTTCTCTCAAAAGTTCGAAATAGGAACTTTAGTTCTAAAGAACAGAAGATTAAGATGCC
TCTTTACGATGTTATGCTTTTGATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAACGGGGTTGTCTGTG
ACATTAAGTCATTTGGTGTTGTCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATACTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATG
AACAAGGAGTTGTTTTACTTAAACAAGGAAGATCGATTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATATGGCCTGGAATTCCTTAGTGAAGATGATGACAA
GAGTGGACCTGGCCAATTTAGTCGACTTAACTTGATGGGTGATGAAGATGATGATGACGACGACGACGATGACGACGATGAAGAATACGACGTGGAACAAGAAGATACAA
AAGCAGAGTGAATTTTATTTTACCAGTCTCTATTTTCATGGCCCAACTTTCAACTTGTTGACCTCTTGTACCATTTTTGGATTCTAGACAGACAAATAAAGAGGTCCATA
GTTTCTTTAGTTGTCCTTGTCCATATTATCTGTTTCTCAGAAACAAAGATCCATAAATGTCTTTTACTCAAACTTCCATTAGAATGGGATGTTTTCCAGGTCTTGGATTT
CAGCTCTAAATGAAAAGTTCAAGAAATGAATATCCTTGTTTGTCTTTTAAA

Protein sequence

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MPLYDVMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQYGLEFLSEDD
DKSGPGQFSRLNLMGDEDDDDDDDDDDDEEYDVEQEDTKAE

IVF0018176 (gene) of Melon (IVF77) v1 genome